Ostrinia nubilalis (European corn borer): 135071252
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Entry
135071252 CDS
T10851
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
onu Ostrinia nubilalis (European corn borer)
Pathway
onu03008
Ribosome biogenesis in eukaryotes
onu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
135071252
09123 Folding, sorting and degradation
03018 RNA degradation
135071252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onu03019
]
135071252
03009 Ribosome biogenesis [BR:
onu03009
]
135071252
03016 Transfer RNA biogenesis [BR:
onu03016
]
135071252
03036 Chromosome and associated proteins [BR:
onu03036
]
135071252
Messenger RNA biogenesis [BR:
onu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
135071252
mRNA degradation factors
5'-3' decay
5' exonucleases
135071252
Ribosome biogenesis [BR:
onu03009
]
Eukaryotic type
Pre-60S particles
RNases
135071252
Transfer RNA biogenesis [BR:
onu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
135071252
Chromosome and associated proteins [BR:
onu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
135071252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
135071252
NCBI-ProteinID:
XP_063821107
LinkDB
All DBs
Position
4:14755861..14808118
Genome browser
AA seq
1401 aa
AA seq
DB search
MGVPKFFRYTSERYPCLNELVKQYQIPEFDNMYLDMNGIIHNCSHPDDSNPHFRITEEKI
FQDIFHYLSILFQIIKPKKLFFMAIDGVAPRAKMNQQRGRRFRSAREAEQLEENAKAKGE
VLPTEKRFDSNCITPGTVFMARLHEQLRFFVKEKMSTDPLWSKVKVILSGHETPGEGEHK
IMDYIRWSRSQPGYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREEVKFGKTTQRATSP
EETNFYLLHLSLLREYLEQEFMSIKDTLPFEYDLEKIVDDWVLMGFLVGNDFIPHLPHMH
ISNDALPLLYKTYMKVLPTLDGYINEAGDLNLQRFEIFMQELAKIDKEKFNEVYVDLKYF
EAKTGRRPNAQERKQYKPNNDETFNVDVEDIKNNKPDDDLQALINATEDMFLEEADESDG
YEETSDEEANIEMEFLLHKKDYYMNKLDYTKVTKEVLADQAEGYVRAIQWNLWYYYKGCA
SWCWYYPHHYAPYISDIKGFSHLKIEFEKGEPFKPFEQLLAVLPSASKHLLPTPFHELMT
EEDSPILHYYPVHFETDLNGKKNDWEAVVLIPFIDETNLLLAMAPCYEKLTEDEIKRNTH
GPMLVYNWTAASQGVEHAPEYFQPIADCHAIETKVWRQELEVPAAELKRGMLPNAMRDMI
FPGFPTMKHLKYKSSIKKCKVKVFDQPSRNESLIVTIVREPDVDDSLEKVAQELLGKVIW
VGWPHLTRSKVISVSNEKMRLHYVDKQNNNVNGAPNYTTEANFGNLHKQWISERSTIIEH
NMNRLGIDLETVDIIIHAVNLKGYKYMIQDNVAMVREPEWCSVACGYARHAVVTDVSAHV
VAQPSRFHTPQEAYPPGDKVFLLTQGQYYGCLATVSFSLYGVGRRKANEVQNWLKSLPHN
NAVRRECGSEALEPEELKALWGSLEKQLQDLKHKEKKVTLQVKWNLLYKAELHEGNIQPD
PSADYKLYDRVVCVARGLSVPAGAVGTVTAVYPPPNANTVRLSDRLNAEPTYQVMFDEPF
PGGMHEELFDEARFYRMLPTNMLNISYGRKLRNSVVTAAPPSPSYHITQPPTLLRREDGH
HSAFASYSPPTPEKAENKPLQDAHTFNNVPPPLDNGTNLLRTLLKISEDEDSSKKKSNKT
TTDTNWRAKNDTSSPSTTTAQSQQPKTQQPSNWRKEMATKPPPGFSNEWTNNTYKNQPPV
PPFPAFNQPFQGPVPGPTQIPFPQFQNPHFARNPSFGYHGNQDSQRQHHQQATVQQANVQ
YRPYQPGVPAFPKHLPTVSGNNITLGPSWVQGQVLYFHNLQAVKQGPPPPSPGARPPGPP
QPFVPLQVQTSRSVTYKRSVVPLQPNASGSSVPINQAAAQPPASYQPQPPNQVPQQKQDP
ASRPQKKKKPRIAANLPFQIE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccaaagttcttcaggtacacgagtgagcgatatccgtgcctcaatgagctc
gtgaaacaatatcagataccagaattcgacaacatgtatctggacatgaacggaatcatc
cacaactgctcccacccggatgactccaacccgcacttccggataaccgaagaaaagata
ttccaggatatattccactatctcagtattctctttcaaatcatcaagccaaagaaactg
ttcttcatggccattgatggtgtcgctcccagagctaagatgaaccaacagagaggcaga
agatttaggtcagccagagaagcagaacaattggaagaaaatgccaaagccaaaggagaa
gtattgccaacggagaaacgttttgacagtaactgcatcactcctggcacggtattcatg
gctcggctacatgagcagctaagattcttcgtaaaagagaagatgtccactgacccgctg
tggtctaaagtgaaagtcatactttctggccatgagacgccaggcgaaggcgagcacaag
ataatggactacatccgatggtcgcgctcgcagccaggctacgatcctaatactcggcac
tgcctgtacgggctggatgcggatttaatcatgctgggcatgtgcacgcatgagccgcac
ttcgcgctgcttagggaggaggtaaaattcgggaagacaactcaacgcgcgacgagtccc
gaagaaacaaatttctacctcctccacttatcgttactaagggagtacttagagcaagag
tttatgtccataaaggatacgcttccctttgagtatgatttagagaagatcgtagacgac
tgggtgcttatggggttcttagtcggaaatgattttataccccatctacctcatatgcac
atatcaaacgatgcattgcctttattgtataaaacgtatatgaaggtattacctacctta
gatggatatattaatgaagctggtgacttgaacctgcaaaggtttgaaatatttatgcaa
gaattagcaaaaatagataaagaaaagttcaatgaggtttacgtcgacctaaaatatttt
gaggccaaaactggtcggcggcccaacgcgcaagaaaggaagcagtacaaacccaacaac
gacgaaacattcaacgtcgatgttgaagacataaagaacaataaacctgacgacgatctg
caagcgctgatcaacgccactgaagatatgtttttagaggaagcagacgaatcagatgga
tacgaagaaactagtgatgaagaggccaacatagaaatggagttcttgttgcacaaaaaa
gattattatatgaataagttagactatacaaaagtcactaaggaagtgttagcggaccag
gcggaaggctacgttcgagccatccagtggaacctgtggtactactacaagggctgcgcg
tcgtggtgctggtactacccgcaccactacgcgccctacatctccgacatcaagggcttc
agccacttgaagatcgagttcgagaagggagagcccttcaagccttttgagcagctccta
gctgtactaccgtcggccagcaagcacttactacccacaccgttccacgagctgatgacg
gaagaagactcgcctatactgcactactatccggtgcacttcgaaaccgaccttaatggc
aagaagaacgactgggaggccgtcgtcctcataccgttcattgatgagacgaatttgcta
ttggcaatggcgccatgctacgagaagctgaccgaagacgagataaagcggaacacacac
gggcccatgctggtatacaactggacggcggccagtcagggggtggaacacgcaccagag
tacttccagcccatagcggactgccacgccatagagacgaaggtgtggcggcaggaacta
gaagtcccggccgccgagctcaagagggggatgctgccgaatgccatgagagacatgatc
ttccccggcttccccaccatgaagcatctcaagtacaaaagcagcataaaaaaatgcaaa
gtgaaggtattcgatcagccgtcgcggaatgagagcctgatcgtgaccatcgtcagggag
cccgacgtggacgacagcctggagaaggtcgcccaggagttgctgggcaaggtcatctgg
gtcggctggccacatctcacgagatccaaggtgatatcggtgtcaaacgaaaagatgcgt
ttgcattatgtggacaaacagaacaacaacgtgaatggagctcccaactacactacagaa
gctaactttggcaacctacacaagcagtggatctcagaacggtccacaattattgagcac
aatatgaataggcttggtatcgacttggaaacggtggatattattatacatgcagtcaat
ctaaaaggttacaaatacatgatccaagacaacgtagcaatggttcgcgaaccggaatgg
tgttccgtagcgtgcgggtacgcgcgacacgcggtagtaaccgatgtgtcggcgcacgtg
gtcgcacaaccctcgcgattccacacgccgcaggaggcttatcctcctggtgataaggtg
ttcttgttgacgcagggacagtactacggatgcttggcgacggtgagtttttcattatac
ggcgtcggcagacgcaaagcaaacgaagtccagaactggttgaagagtctgccgcacaat
aacgcggtgcgccgcgagtgcggctccgaagccctggagcccgaggagctgaaggctcta
tgggggtcgctggagaagcagctgcaagacctcaagcacaaggagaagaaggtcacgctg
caggtcaagtggaacctgctgtataaggcggagctccacgaaggcaacatccagccggac
ccttcagcggactacaagctttacgaccgagtggtgtgcgtggcgcgaggtcttagcgtc
ccagctggtgcagttggtaccgtcactgctgtgtatccaccgcctaacgccaatactgtg
cgcctgtctgataggctcaatgccgaacctacctaccaggtaatgttcgacgaaccattc
ccaggcggtatgcacgaagaattatttgatgaagcgcgattttacagaatgctgccaaca
aacatgttgaacatttcgtacgggcgcaagctgcgtaactccgtagtcacggccgcgcct
ccgtcaccatcctaccacatcacgcagccgcccacgctactacgcagggaagacggacac
cactccgcgtttgctagctatagccctccaaccccagaaaaggcagagaacaagccgtta
caagatgcccacaccttcaataatgtgccaccaccactggataatggcacgaatttgctt
aggactttattaaaaattagcgaagatgaagattcatccaagaaaaagagtaataagaca
actactgatacaaattggcgagccaaaaacgacaccagctcgcctagcaccaccacagcg
caatcgcagcagcccaaaacgcaacaaccatcgaattggcgtaaagaaatggccaccaaa
ccaccgccagggttctcgaacgagtggacgaataatacttacaagaaccagccaccggtg
ccccctttccccgccttcaaccaacctttccaagggcctgttcctgggcccactcaaatc
ccattcccgcagttccaaaaccctcacttcgcacgcaaccctagcttcggttaccatggc
aaccaggactcgcagcgccaacatcaccaacaggccaccgtccaacaggccaacgtccaa
taccggccgtatcagcccggtgtgccagccttccccaaacatttgccgacggtcagcggg
aacaacatcacgctcggtccaagctgggtccaaggacaggtactatacttccataacttg
caggcggtaaagcagggcccgccgccgcccagccctggggccaggccacccggcccgccg
cagcccttcgtgcctctgcaggtgcagaccagtcggagtgtcacgtacaagagatcggtg
gtgccactgcagccgaatgcgagcggctcgtcagtgccgatcaatcaagctgccgcgcaa
ccgccggcctcataccagccgcagccgcctaaccaagtcccacaacagaagcaagacccg
gcatcccgtccccagaagaagaaaaaacccagaatcgccgcgaatctacccttccaaata
gagtaa
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integrated database retrieval system
