Ostrinia nubilalis (European corn borer): 135076791
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Entry
135076791 CDS
T10851
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
onu Ostrinia nubilalis (European corn borer)
Pathway
onu04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
onu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135076791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
FnI_RECK
PSP94
Motif
Other DBs
NCBI-GeneID:
135076791
NCBI-ProteinID:
XP_063827295
LinkDB
All DBs
Position
12:3060204..3073929
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AA seq
1482 aa
AA seq
DB search
MWWSWLVLAALALPAACKELAHDAVEPQAQEPDLESYDEYSPLDEDDNAILAERDFRMST
NLPPIRPSTRTPPPAQRCIDIGRAWAEGEHWKRDNCTLCQCFGGRINCTQLAACLTNPVP
SSRPERPLVPVRGVAGLPGEEGPSGPPGAPGVNGVPGSPGMPGPIGPMPDVNAYLAQLAA
ASGGDKGPAFDPYAYMQASVGQPGIRGIPGPQGPPGPQGFQGPRGEPGEPGLPGLQGTPG
ERGPQGPPGKDGSPGEDGEPGPAGTAGQTGPRGAPGVPGIQGLKGHRGFDGKDGAKGEQG
LPGEKGPTGLPGQMGPAGPLGPVGPRGERGREGPPGPPGMRGADGAIGAPGPMGNIGKPG
APGFPGTPGMKGEQGAFGPKGSQGLQGLRGESGRPGQSGEAGPPGIAGRDGIPGEKGVQG
QPGATGPQGFPGPRGTPGVAGDPGIPGSKGMPGQPGERGIKGDSGPRGESGSPGPRGLPG
IIGPEGKRGKRGLRGPAGNVGPPGERGLNGLRGLPGPDGQMGPKGQPGERGGVGLPGTKG
SSGDPGRPGPQGIQGARGPVGRPGITGKTGPQGERGIPGADGRPGEQGSQGLQGPPGLMG
SPGERGLQGEPGKDGEPGQAGPQGPKGDAGRDGNPGIQGPQGASGPSGERGPPGPAGQTG
FPGMPGSAGLPGSPGKEGEMGVAGPAGPPGPSGPRGERGFPGERGLPGQAGATGEKGESG
AQGPDGPPGPEGPRGSKGHPGPVGAMGMPGLRGMTGSPGEKGERGSAGPPGNDGPPGRQG
EQGPQGPTGPAGPPGEPAERGEPGMAGVPGESGAPGSPGERGQPGMQGAPGLSGPPGLTG
MPGLKGDRGYSGAKGQQGSPGSPGVPGEPGLRGLPGQAGAKGARGEQGHKGEAGHAGLPG
RPGDLGPPGPQGSTGPAGTPGIPGAKGATGDSGRPGPSGPQGLTGPAGPEGPKGERGSEG
ESGPQGLTGPPGPAGERGPAGLPGMLGPPGSPGLRGSQGESGIPGKPGADGAPGPVGPPG
LQGPPGQMGEPGPEGRPGKQGQPGISGRPGDKGPIGQPGPSGPQGPPGLQGPPGPTGQTG
PAGERGPRGESGPPGVDGPQGPAGKQGAPGLDGTKGERGEAGLNGAKGHAGLPGLPGMVG
APGRQGERGLPGPGGPPGKDGEPGHRGPAGRDGNPGLQGPPGPAGGRGAPGDAGRHGPPG
PAGPPGPPGPPGEGLAYDAAAIAAMLQQGSVKGPDPLGDDPNSMPPRFFSEDMSAAERKE
IVMKAYERLKVSLNKFLKPDGSKEAPAKTCADIKYHHPGFESGQYWIDPNGGDLNDAIMV
HCDMDTGSSCIYPKPMQSKDITYKGKDKEVWLSEMEEGFTITYKADHSQLTYLQLMSAHA
TQNVTFHCRNTVGFYDPATRNHRHGIKLLAYNDAEILPKANNRLRYKALLDECQFKKNTW
AKTVVQFDTDKSGRLPLLDVGVRDLGRANQEFRVELGLACFS
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgtggtggagttggctggtgctggcggcgctggcgctgccggcggcgtgcaaggagctg
gcgcacgacgccgtggagccgcaggcgcaggagcccgacctcgagagctacgacgagtac
tcgcctctcgacgaagacgataacgctatcctcgctgaacgagacttcagaatgtcgaca
aaccttcccccaatccgcccttctacacgaactccaccaccagcgcagcgttgcatcgac
atcgggcgcgcctgggccgagggcgagcactggaagcgagacaactgcaccctctgccag
tgcttcggaggccgtatcaactgcactcagcttgccgcttgtctcaccaatccagtaccc
tcaagcagaccagaaaggcctttagtaccagtaagaggcgtggccggactccctggtgaa
gagggcccgtcaggacctccaggagcaccaggtgtcaacggagtccctgggtctccaggc
atgccggggcctatcggaccaatgcctgatgtgaacgcgtacctagcgcaactggcggcg
gcatcaggaggcgataaagggcctgccttcgacccatatgcgtacatgcaagcttctgtt
ggacaacccggcattagaggaataccaggaccacaaggcccgcccggcccgcaaggcttt
caaggtccgagaggagaacccggtgaaccgggtttacctggattgcaaggtacacccgga
gaaaggggacctcaaggaccacctggaaaagatggatcacccggagaggatggagaaccc
gggccagccggaacagcaggacagacggggccccgtggtgcccctggagttcccggtatt
cagggtcttaagggtcaccgtgggtttgacggcaaggatggcgctaaaggtgaacaggga
ctgcctggagaaaagggacctactgggctaccgggtcaaatgggaccggctggaccactt
ggtcctgtaggaccaaggggtgaacgtggccgagaaggtcctcccgggccaccaggaatg
cgtggagctgacggtgctattggagcacctggaccaatgggtaacatcggaaaacctggt
gctcctggcttccctggaactccgggaatgaaaggcgaacaaggagctttcggacccaaa
ggaagtcagggcttacagggcctacgtggtgaatctggccggccaggacaatcgggtgaa
gctggaccccctgggattgctggacgtgatggaatacctggcgaaaagggtgtacaagga
caacctggagccactggccctcaagggttccctggaccacgtggtacacctggagtagct
ggagacccaggaatccctggatcaaaaggcatgccgggacaaccaggggaaagaggtatc
aaaggagattcgggtcctcgaggtgaatcaggttctcctggtcctaggggattacccggc
attatcggtcctgaaggcaaaagaggcaaacgaggcttgagaggccctgctggcaatgta
ggccctccaggagagagaggtttgaatggattaagaggtttgcctggtcctgatggtcaa
atgggtccaaaaggtcagccaggggaacggggaggagttggtctacctggaacaaaaggt
agctctggtgatcctggtagacctggaccacagggaatacaaggtgccagaggacctgtt
ggcagacccggcattacaggcaagacgggtccgcaaggagagaggggaattcctggagct
gatggtcgtccaggtgaacaaggatcccaaggattacagggaccgcctggacttatgggc
agccctggagaaagaggcttgcagggggaaccaggtaaagatggcgaacccggtcaggca
ggaccacaaggacctaaaggcgatgctggacgagatggaaatcctgggatacagggaccg
caaggagcttctggtccttctggcgagagaggtccacctgggccagctggacagactggt
tttccgggtatgcctggatcagctggattaccagggtcaccgggtaaagaaggtgaaatg
ggtgtagcaggaccagcagggcctccaggaccttcgggtccacggggagaaagagggttc
ccaggagagcgtggattgccgggacaagctggagcgacgggagaaaagggagagtcagga
gcccaaggccctgatggaccaccgggcccagaaggtccgagaggcagtaagggacaccca
ggtccagtaggcgcgatgggaatgccgggattgcgaggtatgactggctcaccgggagag
aagggcgaacgaggatcggctggaccaccgggcaatgatgggccaccaggtcgtcaaggt
gaacaaggaccgcaaggacctactggcccagccggtcctccgggtgaaccagcagagcgg
ggtgaacctggtatggctggcgtccccggtgaatctggcgcccctggctctcctggtgaa
aggggccagccgggaatgcaaggcgctcctggactctcgggacctccgggtctcactggc
atgccagggctaaagggtgaccgcggatactctggagcgaaaggacaacaagggtcaccg
ggtagcccaggtgtacctggagaacctgggcttcgtgggctcccagggcaagccggcgcg
aagggagctcgtggtgaacagggtcataaaggagaggcaggacacgcgggtctgcccggc
aggcctggagatctaggacctccaggtcctcaaggcagcactggccctgcgggaacacca
ggcatacccggcgctaagggagcaactggagattctggaagaccaggcccttcgggacct
caaggattaacaggacctgcaggtcctgaggggcctaaaggcgaaagaggtagcgaaggc
gaatcgggaccccaaggattaactggacctccgggtcctgcaggagagagaggaccggct
gggcttccaggaatgttaggacctccaggatcaccagggcttcgtgggtcacagggcgaa
agtggaatacctgggaaacccggtgcagatggagctccaggacccgttgggccaccaggc
ttacaaggcccacccggacaaatgggagaaccaggacctgaaggacgaccaggcaaacaa
ggacaacctggaatatcgggacgaccaggagataagggaccgattggacagccaggtcct
tctggaccccagggaccacctggtctacagggtccaccaggcccaactggacagacaggg
cctgccggcgaacgtgggccgcgtggtgaatctggtcctcctggtgttgatgggccccaa
ggtccagcgggcaaacaaggagcacctggtttagacggcacaaagggcgaacgcggtgaa
gcgggattaaatggtgctaaaggacatgcgggcttgccaggtctacctggtatggttgga
gctcccgggagacaaggtgaacgagggttgcctgggccgggtggaccgcccggaaaagat
ggcgaaccaggacatagaggacccgctggtcgtgatggcaatcctggacttcaaggacca
cccggccctgccggcggtcgcggggccccgggagacgcagggcggcacggaccacctgga
ccggctggtcctcccggcccccctggccctcctggagaaggcttggcttacgacgctgct
gctattgccgctatgcttcaacaaggctcagttaaaggaccagacccattaggggacgac
cctaactcgatgccacctcgattcttcagtgaagacatgtcagctgctgagagaaaagaa
atcgtgatgaaggcgtatgaacgactaaaggtgtccctcaataagttcctgaaacctgat
ggatcaaaggaagcaccagctaaaacatgcgcggacatcaagtatcaccatccaggattc
gaaagtgggcaatactggattgacccgaatggtggcgacctgaacgatgctatcatggtg
cactgcgatatggacactggcagcagctgcatttatccgaaacccatgcaatctaaggac
atcacttacaagggcaaagataaagaagtctggctaagcgagatggaagaagggttcacg
atcacatacaaagcggaccactcccaactgacatacctgcagctgatgtctgcccacgct
actcagaatgtgactttccactgccgcaacaccgtaggattctacgaccctgccactagg
aaccaccgccacggaatcaagttgttggcttacaacgatgccgagatcttgcctaaggcc
aacaacaggttgaggtacaaggcgctactggatgaatgccaattcaagaaaaacacctgg
gcgaagacagtagtgcagttcgacacggacaagtcaggacggctgccactcctggatgtg
ggagttagggacctgggaagagcaaaccaggagttccgcgtagagctaggccttgcttgc
ttcagctag
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