Ostrinia nubilalis (European corn borer): 135079317
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Entry
135079317 CDS
T10851
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
onu Ostrinia nubilalis (European corn borer)
Pathway
onu03013
Nucleocytoplasmic transport
onu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
onu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135079317
03015 mRNA surveillance pathway
135079317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onu03019
]
135079317
Enzymes [BR:
onu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135079317
5.6.2.5 RNA 5'-3' helicase
135079317
Messenger RNA biogenesis [BR:
onu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135079317
mRNA cycle factors
Common to processing body (P body) and stress granule
135079317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
AAA_16
AAA_22
SRP54
nSTAND3
nSTAND_NTPase5
UvrD_C_2
AAA_5
DUF7953
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
135079317
NCBI-ProteinID:
XP_063830017
LinkDB
All DBs
Position
16:complement(7000839..7006603)
Genome browser
AA seq
1030 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLTTSNQ
VNGLGRSDHTSKVLNVTNAIAELQFEEEDEALYSSKELPDHACKYCGIHDPATVVMCNIC
SKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPNQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSVYDRARPLRDPLAYVGPERAALLHAPVPPAAFAP
HRPPPRPRRRAPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDGLLSQDSTYQ
GGFRARCSQY
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtatggtccgagctcccaaacgctcacgtttctggacactgaagaa
gcggatcttattggagctgatacccagggctccgaatttgagtttactgacttcactctc
ccttctcaaagccaaacgcaggcatctcaacatgaccacggactcacaacatccaatcag
gtaaacggtcttggacgttcagaccatacatctaaagtcttgaacgtgactaatgcgata
gcagagttgcaattcgaggaagaagatgaagctttgtacagcagtaaagagttgcctgat
catgcttgcaagtactgtggcatccacgaccctgccacggtcgttatgtgcaacatatgc
agtaaatggttttgcaatgggcgtgggaacacctcaggctctcacatcatcaatcacctg
gtcagggccaagcataaggaagctgccctgcatcgtgacggaccccttggagagacattg
ctggagtgctattcttgtggtgcccgaaatgtatttgtccttggatttattccggccaaa
gctgactctgtggttgttttgttgtgccgccaaccgtgtgctgcacagagctcattgaag
gatatgaattgggaccaagaacagtggaaacctttgatttctgatcgtgccttcctgtcc
tggctagttaaagttccatctgaggcagagcaaatgagagctcgccaggtgacccctcaa
caaatagggcgccttgaagaactatggcgtgacaacgtcgatgctacttttcaagacttg
gagaaacctggagtggatgaggaacctaaccaagttcttttgagatatgaagatggctat
caataccagaatatctttggaccattagtgaaattggaagctgactatgacaagagacta
aaagagtctcagacccaggaaggcattgaggttcgctgggacgtgggcctcaataagaag
accattgcttactttacactcgccaaaactgatagtgatatgaagctcatgcatggtgat
gagcttaggttgagatacgtcggcgagttgcacaaggcgtggtcgggcgtgggtcacgtg
atcaaggtgcctgacaactacggcgatgacgtaggactcgagctcaagagcggcgccggc
gcaccgctggattgcacttctaactttgtcgttgactttatttggaagagcacgtcgttt
gacaggatgcaactggccctgcgcaaattcgccgtagacgattcttcggtgtcgggctac
atttaccgccgcctgctaggacacgaagtcgaggaagttctgttccgcgtccatctgccg
aagcatttcagcgccccgaacttgcccgacctcaatcgctcgcaggtttacgctgtgaaa
catgccctccaacgtccgctctcattgattcaagggccccccggcaccggcaagacggtc
acgtccgccaccatcgtgtaccagctggtgcgccagaacggcgggcccgtgctcgtgtgc
gcgccctccaacaccgccgtcgaccagctcaccgagaagatccaccgcaccgggctcaag
gtggtgcgcctgtgcgccaagtcgcgcgaggccatggagtcctccgtgtccttcctggcg
ctgcacgagcaggcgcgcgcgctcgggtccgccgacagcgagctgcgcaagctcacgcgc
ctcaaggaggaggccggcgagctgtcggccgccgacgagcgccgctaccgcgccctgcgc
cgcgccgccgagcgccgcctgctcgacgccgccgacgtcgtctgcaccacctgcgtcggc
gccggcgacccgcgcgtcgcccgcatgcgcttccagtccatcctcatcgacgagggcatg
cagtccaccgagcccgagtgcatggtgcccgtcgtgctcggcgcgcgccagctcatcctc
gtcggcgaccactgccagctggggcccgtcgtcatgtgcaagaaggccgccaaggccggc
ctcagccagagcctgttcgagcgcctcgtcgtgctcggcatccggcccttccgcctcgag
gtgcagtaccgcatgcacccggagctgtcgcgcttcccgtccgacttcttctacgagggc
tcgctgcagaacggcgtcagcgccgaggagcgccgcctgcacaagatcgacttcccgtgg
ccgcgccccgaccgcccgatgttcttctacgtcacgcagggccaggaggagatcgccggc
tccggcacgtcctacctgaaccgcaccgaggccgccaacgtcgagaagctcaccacgcgc
ttcctcaaggcgggcgtgcgccccgagcagatcggcatcatcacgccctacgagggccag
cgctcctacctcgtgcagcacatgcagtaccagggcagcctgcacgccaagctgtaccag
gagatcgaggtggccagcgtcgacgccttccagggccgcgagaaggacatcatcatcatg
tcgtgcgtgcgctccaacgagcaccagggcatcggcttcctcagcgacccgcgccgcctc
aacgtggcgctcacgcgcgccaagtacgggctcatcgtcgtcggcaaccccaaggtgctc
agcaagcagccgctgtggaaccacctgctcgccttctacaaggagcgccgcgtgctcacc
gagggcccgctgtccaacctcaaggagtccgcgatccagttcgcgaagcccaagaagctg
gtgaacgcgcagaaccccggctcgcacttcatgtccacgtcgatgttcgacgcgcgcgag
gccatggtgccgggctcggtgtacgaccgcgcgcggccgctgcgcgacccgctggcctac
gtcgggcccgagcgcgccgcgctgctgcacgcgcccgtgccgcccgccgccttcgcgccg
caccggccgccgccgcgcccgcgccgccgcgcgccgcgcctgtcgcaggagccgctgtcg
cagcagccgccgctgtcgctgtcgcagggcgcctcgcagcccgacttcagccaggagtcg
gcggcgcccgactgcccgtcgcagccggacgggctgctgtcgcaggactccacgtaccag
ggcggcttccgggcgcgctgctcgcagtactga
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