Ostrinia nubilalis (European corn borer): 135082001
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Entry
135082001 CDS
T10851
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
onu Ostrinia nubilalis (European corn borer)
Pathway
onu03013
Nucleocytoplasmic transport
onu03015
mRNA surveillance pathway
onu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135082001
09122 Translation
03013 Nucleocytoplasmic transport
135082001
03015 mRNA surveillance pathway
135082001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onu03019
]
135082001
03041 Spliceosome [BR:
onu03041
]
135082001
Enzymes [BR:
onu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135082001
Messenger RNA biogenesis [BR:
onu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135082001
Spliceosome [BR:
onu03041
]
Complex C
Other components
EJC/TREX
135082001
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135082001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
135082001
NCBI-ProteinID:
XP_063832820
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All DBs
Position
21:1092306..1093922
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AA seq
426 aa
AA seq
DB search
MADNDELLDYDEDEEQAEQQTTEGAADAVPKKEVKGSYVSIHSSGFRDFLLKPEILRAIV
DCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSENHVYVLVMCH
TRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVN
SKKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKK
FMQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCI
ALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITMVSDENDAKILNEVQDRFDVNITELPEEIELS
TYIEGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggccgataacgacgaacttctcgactacgacgaggatgaagagcaggcggaacagcag
actaccgaaggggcggcagacgcggttcccaagaaagaggttaagggttcttacgtatca
atccacagctctggcttcagagattttctcttgaaaccggagattttgagagcaatcgtc
gactgcggtttcgagcatccttcagaagtccagcatgagtgcattccacaagccgtattg
ggcatggacattctatgtcaagcgaagtccggtatggggaaaacggccgtgtttgtttta
gcaacattgcagcagctggaaccgtctgagaatcatgtttacgtgctagttatgtgccac
actcgtgagttggccttccagatcagcaaagagtatgaaagattctcaaagtacatgtct
ggtgtacgtgtgtccgtgttctttggcggaatgcccatccaaaaggatgaggaagtgctg
aagaccgcctgcccgcacatcgtcgtgggaactcccggcagaatcttagctttagtcaac
agcaagaaattaaacctgaaacatctaaaacacttcatcctggacgagtgtgacaaaatg
ctggaatctctggacatgaggcgcgacgtgcaggagatatttaggaacaccccacacgga
aaacaagttatgatgttctccgctactttgagcaaggaaatccgaccagtgtgcaagaaa
ttcatgcaggatcctatggaggtgtacgtagatgacgaggccaagctgacactgcacgga
ctgcagcagcattacgtgaagttgaaggaaaacgagaaaaacaaaaagcttttcgagctg
ttggatgttttggaattcaaccaagttgtgatatttgtgaagtcagtgcaacgttgtata
gcactagctcaattgctgacagatcagaacttccctgctattggaatccacagaaacatg
actcaagatgagcgtctttctcgttatcagcaattcaaggacttccagaagcgaatcctt
gttgccaccaacctgtttggacgaggaatggatattgagcgagtgaacatagtattcaac
tatgacatgcctgaagactcagacacctacttacaccgagtggctcgcgccgggcgtttt
ggtaccaagggtttggccataaccatggtatctgatgaaaatgatgccaagatcctgaat
gaagtgcaagaccgtttcgatgtgaacataacggagttgcctgaagagatagagctgtct
acttacattgagggccgataa
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