Ostrinia nubilalis (European corn borer): 135087685
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Entry
135087685 CDS
T10851
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
onu Ostrinia nubilalis (European corn borer)
Pathway
onu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135087685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onu03019
]
135087685
03041 Spliceosome [BR:
onu03041
]
135087685
Messenger RNA biogenesis [BR:
onu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135087685
Spliceosome [BR:
onu03041
]
Complex B
Other components
Prp19-related factors
135087685
Complex C
135087685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
Mad3_BUB1_I
NRDE-2
PPR
ARM_TT21
TPR_10
DHR-2_Lobe_A
ARM_TT21_C
DUF908
Motif
Other DBs
NCBI-GeneID:
135087685
NCBI-ProteinID:
XP_063838502
LinkDB
All DBs
Position
3:5409824..5412757
Genome browser
AA seq
848 aa
AA seq
DB search
MPQLDGKEIGIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKGAPKHEINIIYERALKEL
PGSFKLWYNYLKLRRSQIRGRCITDPCYEDVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
KITTTRKAFDSALRALPITQHHRIWPLYLTFLKKHNIPETAIRVFRRYLKLCPEDTEEYI
DYLISINKLDEAALKLAHIVNNENFQSKHGKSNHQLWNELCELISKNPDKIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKPSPTEDDDVDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYEKNDQIEDARLIFEKATQ
VNYAKVDDLASVWCEWAEMEIRHENYEEALKLMQKATVLPSRKVAYHDDTETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPPEFAKSIYLLYAKLE
EEHGLARHAMSVYERATTAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPEDK
AREMCVRFSEMETRLGEIDRARAIYAHCSQMCDPRITADFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTVSDLAPGMKDGMRMLEAKAAEMAVQSKG
NIMFVRGETQGLKESTEKVVNPDEIDIDEDSENSDEDEEMAPVQKKEIPAAVFGGLVSEN
NKDSNDVN
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaacttgatggcaaagaaattggaatattttttagtgaagaagacttaccatat
gaagaagaaattcttcgcaacccattctcagtaaaacattggcttcgttacatagagcac
aagaaaggagctcctaaacatgaaattaatataatatatgaaagggctttaaaagaatta
ccagggtcattcaaactatggtataattatctgaaattgagaaggagtcaaattagaggt
cgctgtattacagatccatgctatgaagatgttaacaactgttttgagagatccttagta
ttcatgcataaaatgcctagaatttggatggattattgcacttttctgactgatcagtgt
aaaataacaactacaaggaaagccttcgacagtgctttgagagcattgcctattactcaa
catcatcgcatatggccattgtatttaacttttctgaagaagcataacataccagagact
gcaattagagtctttagaagatatttgaaattgtgccctgaagacacagaggaatatatt
gattatttaatatcaattaacaaactagatgaagctgctttaaaactagctcatattgta
aacaatgaaaattttcaatccaaacatggcaaatcaaatcatcaactttggaatgaactg
tgtgaattaatatctaaaaatcctgacaaaattcactcacttaatgtggatgccatcatc
agaggtggtcttagacgttacacagaccaattaggtcatctgtggaactctctagcagat
tattatgttagaagtggtctatttgaaagggctagagacatttatgaggaagctatacaa
acagtcaccacagttagagatttcactcaagtttttgatgcctatgcccaatttgaagaa
ctcagtctcagcaaaaagatggaagaagtggcaaaaaaacctagccccactgaagatgat
gatgttgatttggaattaagactggctaggtttgagtacctcatggaaagaagattattg
cttttaaattctgtacttctcaggcaaaatcctcataatgtagctgaatggcacaaaaga
gtgaagttgtatgaaggaaaaccccatgaaattattgatacttatactgaagcagttcaa
acagtagatcctaaattggctgttggaaaactgtatacattgtgggttggctttgcaaaa
ttttatgaaaaaaatgaccagatagaagatgccagacttatctttgaaaaagcaacacaa
gttaactatgctaaagttgatgacttagcatcagtttggtgcgagtgggctgaaatggaa
ataagacatgagaactatgaagaagccctgaagttaatgcaaaaagcaactgttttacca
agcaggaaagtagcctaccatgatgatactgaaacagttcaaatgcgtttatacaaatca
ttaaaagtttggtccatgtatgcagacctagaagaaagttttgggacttacaagtcttgt
aaagcagtttatgatcatattattgatttgaaaatagccactcctcagataatcataaat
tatggtctattcttagaggaacataactattttgaagaagcttttagagcatatgagaaa
ggaattgcactttttaagtggcctaatgtgtatgatatatggaatacctatttaaccaaa
tttttgaaacggtatggtggatccaaacttgagcgtgccagagatctctttgagcaatgt
ttggaacattgtccaccagagtttgcaaaatccatttacttgctgtatgctaaactagag
gaagaacatggcttagcaagacatgccatgtcagtgtatgaaagagcaacaacagctgtg
ttgccagagcagatgttcgaaatgtttaacatctacatcaaaaaagctgctgaaatttat
ggagtgccaaaaactcgccaaatttacgagaaagctattgaaactttaccagaagataag
gcgagagaaatgtgcgtgcgcttttctgaaatggagactcgtttgggagaaattgaccga
gctcgtgctatctacgctcattgcagtcaaatgtgtgatcctagaatcactgctgatttt
tggaatacatggaaggaatttgaagtcagacatggcaatgaagacacaatgagagaaatg
ttacgaataaaacgaagtgtacaagctacatataacactcaagtcaacatgatgtcagcc
cagatgttgagctcagcagctcaagcagctggaactgtatcggatctcgccccgggcatg
aaggacggcatgcgcatgctggaagccaaggctgcagaaatggctgtccaaagcaagggc
aacattatgttcgtccgaggagaaacccaaggtcttaaagaaagtacagaaaaagtggtc
aatcctgatgaaattgacattgatgaagattctgaaaatagtgatgaagatgaagagatg
gcaccggtgcaaaagaaagaaataccagctgctgtttttggtggacttgtatctgaaaat
aataaggacagcaatgatgtcaattga
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