Oenococcus oeni: OEOE_1643
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Entry
OEOE_1643 CDS
T00408
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ooe
Oenococcus oeni
Pathway
ooe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ooe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OEOE_1643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ooe03019
]
OEOE_1643
03009 Ribosome biogenesis [BR:
ooe03009
]
OEOE_1643
Enzymes [BR:
ooe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OEOE_1643
Messenger RNA biogenesis [BR:
ooe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OEOE_1643
Ribosome biogenesis [BR:
ooe03009
]
Prokaryotic type
rRNA helicases
OEOE_1643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ABJ57493
UniProt:
Q04DH9
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All DBs
Position
complement(1561086..1562651)
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AA seq
521 aa
AA seq
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MKFEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPIL
EEVDPKNPQIQALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALKEHP
QILVGTPGRLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLF
SATMPDDIKKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLFDVEQPE
LAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAA
RGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAIEKLINK
RMAALKPPSAEEAHIARLKNAKAETYAVLGKTTIDNVEDEATEIANQYDAKLIAAALLHA
LSKDDERTRPVDIAQEKPLPRRHSSSDHGHNFRSGRSNGNRGRNGHSNGNRGGRRGGFKE
EFVIDRGHKPVDRRNQRIQARPKGVAKAAPKKREFKIVKKS
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttgaagaatttggacttagtccagaacttttgtctgcggtcaaaaagcatggt
tacgatgaagcaaccccgattcaggaaaaaacaattccgttgattatacagggagttgat
gtcattggccaagcacagaccggtacaggtaagacggcagcttttggtttgccgatttta
gaagaagtggatccaaagaacccacaaatccaagccttggttatcagcccaacacgcgag
ttggctatgcagaccgaagaagaactcaacaagcttggttccgacaaacacgtgaaaact
caagttgttttcggtgggtatgatattcgccgacagatccatgctttaaaagaacatcca
caaatccttgtcggtactcccggacgattgattgatcatttgaatcgtcatacgattgat
tttcgcggagttaagactttggtaatcgatgaagccgacgagatgctaaacatgggtttc
ttagaagatatcgaaacgattgttcattacacgccggatgatcgtcaaactttacttttt
tctgcaacgatgcctgacgacattaagaaaataggcgttaaatttatggaagatcccgaa
gaagtccacattgcttctaagggtctgactatcgatttggttgaccaatatctggttaat
actcgcgaatatgaaaagttcgatgcgatgacacgcttattcgatgtcgaacaacctgaa
ctggcaattgtctttggtcggacaaagcgtcgggttgacgaattgaccaaagctttgcag
ctccgtggctataaagctgccggaattcatggcgatttggatcaagcagcccgtatgcgg
actttacgttcctttaaaaaaggagaattgcagttcttggttgcaaccgatgttgcggct
cgtggcttggatatttccggagttacgcatgtttataattacgatgttccccaagatccc
gagtcttacgttcaccggatcggtcgtaccggtcgtgccggacaccatggtgtttctgta
acttttgttgttcgtggtgaaattgattatctgcgggcaattgaaaaattgatcaataag
cgtatggccgctttaaagccgccttcggctgaagaagcgcatattgcccgtctgaagaac
gccaaagcagagacttatgctgttttgggtaaaacaactattgataacgtcgaagacgaa
gcaacagaaattgccaatcaatacgatgctaagttaatcgcagctgcattgttgcacgct
ctgtccaaagatgatgaaagaactcgtcctgtcgatatcgcacaggaaaagcctcttccg
cgtcgtcatagttcatctgaccacggtcataacttccgtagtggacgctctaatggcaat
cgtggtcgcaatggtcatagcaatggcaaccgcggtggtcgtcgtggcggatttaaagaa
gaatttgtaattgatcgtggccataagccggtcgatcgtcgcaatcaacgaattcaggca
cgtccaaaaggggttgcgaaagcggctccgaaaaaacgtgagtttaaaattgtcaaaaag
tcatga
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