Otariodibacter oris: A6A10_02200
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Entry
A6A10_02200 CDS
T06287
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ooi
Otariodibacter oris
Pathway
ooi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ooi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A6A10_02200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ooi03400
]
A6A10_02200
Enzymes [BR:
ooi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A6A10_02200
DNA repair and recombination proteins [BR:
ooi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A6A10_02200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QGM81652
LinkDB
All DBs
Position
468339..471794
Genome browser
AA seq
1151 aa
AA seq
DB search
MSYKLQFSLPKINQSHQDHQILGNLIGHSDTLAIAQASQQFNGLTIVVTPDTRTALRLEK
SLPQFTSLEVQLFPDWETLPYDNFSPHQDIISARLSALFHLQQGKKQIFLLPITTLLQKV
CPPNYLANNVLLIKKGDTFSIEKLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGSE
LPYRLDFFDDEIDSIRTFDIDSQRTIAEIQAIDLLPAHEFPTDNKGIEFFRGQFREQFGE
IRREPEHIYQQVSKGVLNAGIEYWQPLFFEEMASLFDYLSEQTLFITFDHIQEKAEYFLK
DTEQRYENRRVDPMRPLLSPDKLWFSVDYVYQHLKHYPRLSLLNESVSISAAKKNANILP
LPEVAVQSQLKEPFSQFLAFQQTFEGRILFSVETEGRRETLLDLLSPLNIKPTQVESFDE
ISTPFSLMIGNLDKGFIIEETSGELLAIICETDLLGEKIQQKSQRDKNRKTVNPDTLIRN
LAELKIGQAVVHLENGVGRYAGLTTLDAGGVKAEYLVLNYANDAKLYVPVASLHLISRYI
GGSDENAPLHKLGSEAWAKSRQKAAEKIRDVAAELLDVYAKRESQKGFAFEYDKEAFKQF
SATFPYQETDDQQMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAIRATFLAVMNQKQVA
ILAPTTLLAQQHYENFKDRFANQPVQVEVLSRFKTAKEQKDILQRTIEGKVDILVGTHKL
LQDDVKFRDLGLLIIDEEHRFGVRQKERIKQLRANVDILTLTATPIPRTLNMALNGMRDL
SIIASPPARRLSIKTFVRQSDDTVIREAILREILRGGQVYYLHNDVATIENTAQQLAELV
PEARIVIGHGQMRERELERVMADFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFGL
AQLHQLRGRVGRSHHQAYAYMLTPPPKTLTKDAQQRLEAISTIDNLGAGFVLATHDLEIR
GAGELLGSEQSGQIESIGFSLYMDLLESAVKALQEGREPTLDEITQQQVEIELRIPALLP
DDYVPDVNMRLSFYKRIASAENDNELKDLKIELIDRFGLLPEATKNLFHITQLRYLAKAL
ELKKIDAGINGGYLEFKPTAQPDPMKFLQLIQSDKNTFKFDGPHKFRFTKPMESGEERLK
FVAELIETLTN
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtcatataaacttcaatttagcctaccgaagatcaatcaatctcatcaagatcatcaa
attttaggtaacttaatcggacattccgatacccttgcgattgcacaagcaagccaacaa
tttaacgggctaaccattgttgttacacccgacacacgaaccgcattacgcttagaaaaa
agcttgccacaatttacgtcgttagaggtacaacttttccctgattgggaaacattacct
tacgataatttttctccgcaccaagatataatttctgcacgtttatctgcattgtttcat
ctacagcaaggtaaaaaacagatctttttattaccaataactactttattacaaaaagtt
tgcccgccaaactatttagccaataacgtgttattgattaaaaaaggcgatacgttttct
atcgaaaaattacgtttacaactagaaaatgcaggctatcgtgcggtagaacaagtgtta
gagtatggcgaatatgcggtaaggggggcgttacttgatttatacccaatggggtcagaa
ttgccttatcgtttagatttttttgatgatgaaattgactcgatccgaacttttgatatt
gatagccaacgcactattgcggaaattcaagccatcgatctgttacctgcccacgaattt
ccaacggataacaaaggcattgaatttttccgagggcaatttagagaacaatttggtgaa
attcgcagagagcctgaacatatctatcagcaagtgagtaaaggtgtgctaaatgcgggg
attgaatattggcaaccactcttttttgaggaaatggcaagtttgtttgattatctttca
gagcaaaccttatttatcacattcgatcatattcaagaaaaagcggaatactttttaaaa
gatactgaacaacgttatgaaaatcgtcgagtggatccaatgcgtccattattatcgccc
gataaattatggtttagcgttgattatgtgtatcagcaccttaaacattatcctcgtttg
agtttattgaatgaaagtgtgtccatttcagcggctaagaaaaacgccaatattttgcct
ttgcccgaagtggctgtacagtcgcaactgaaagagcctttttctcaatttttagcattc
caacaaacttttgaaggcagaatcctcttttctgtagaaaccgaagggcgaagagaaacc
ttacttgatttactttcaccactgaatattaagccgacacaagttgaaagttttgatgaa
attagtacgccattttcattgatgatcggtaatctcgataaaggctttattatcgaagag
acaagcggtgagttactggcaattatttgcgaaacagatctacttggcgaaaaaattcaa
caaaaaagccaacgcgataaaaatcgtaaaaccgtcaatcctgatacgcttatccgtaat
ttagctgagttaaaaatcgggcaagcggtagtgcatttagagaatggtgtagggcgctat
gctggactgacaacccttgatgcaggcggggttaaagcagaatatttagtccttaactac
gcgaatgatgcgaaattatatgtgccagtggcatcgttacatttaattagtcgctatatt
ggtggctcagatgaaaatgcgccattgcataaattaggcagtgaagcttgggcgaaatct
cgtcaaaaagccgctgagaaaattcgtgatgtggcagccgaattacttgacgtttatgcg
aaacgagaatcacaaaaaggttttgcctttgagtatgataaagaagcctttaagcaattt
agtgctaccttcccttatcaagaaacagacgatcaacaaatggcaattaatgctgttatc
agtgatatgtgccaaccaaaagcaatggacagattggtctgtggtgatgttggctttggt
aaaacggaagtcgctattagggcaacattcttagcggtaatgaaccaaaaacaagtggcg
attcttgccccgactaccttattagctcaacagcattatgaaaattttaaagatcgtttt
gctaaccagccggtacaagtggaggtgctttctcgttttaaaacggctaaagagcagaaa
gatattttacaacgaactattgagggcaaagttgatatcctagtcggtacacataaattg
ttacaggacgatgtaaaattccgtgatttaggtttattgattattgatgaagagcatcgc
tttggggtgcggcaaaaagaacgaattaaacagttacgagccaatgtggatattctaacg
ctaacagcaacaccaattccaagaacgctcaatatggcgttaaatggaatgcgggattta
tccattattgcaagtccgccagcaagacgtttatccattaaaacctttgttcgccaaagt
gatgataccgtgattagagaagcaattctgcgtgaaattttacgtggaggacaggtttat
tatctacataatgatgtggcgaccattgaaaataccgctcaacaactggctgaacttgtg
ccagaggccagaattgtgatcgggcacggtcaaatgcgagaacgtgagttagagcgtgta
atggcagatttttatcatcaacgctttaatttacttgtgtgttcaaccattattgaaaca
ggaattgatgttccaactgccaatacgattattattgagcgagcagataaattcggttta
gcacaattacatcaattaagaggtcgtgtgggacgctctcatcatcaagcctatgcttat
atgctcactccgccaccaaaaactttaaccaaagatgctcaacagcgtttagaggcgatt
agcaccattgataatctcggagcgggctttgtgttagcgactcacgatttagaaattcgt
ggagcaggtgaactgcttggtagcgaacaaagtgggcaaattgagtcgattggattctct
ctttatatggatttattggaaagtgcggtaaaagccttacaagaaggacgagaaccaacg
ttagatgaaatcacacagcaacaagttgagattgaattgcgtatccctgcacttctgcca
gacgattatgtgccagatgtgaatatgcgactttcgttctataaacgcattgccagtgca
gaaaatgataatgaattaaaggatctcaaaattgaattgattgaccgctttgggttattg
ccagaggcgactaaaaatttattccacattacccaattacgctatttagccaaagcgttg
gaattgaaaaaaatcgatgcgggaatcaatggcggttacttagaatttaaaccaacagca
cagcctgatccaatgaagtttttacagttgattcaatctgataaaaatacctttaaattt
gatggaccacataaattccgttttactaagccaatggaatctggtgaggaacgtttaaaa
ttcgtagctgagttgatagaaactctcacaaattaa
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