Oceanobacillus oncorhynchi: NP440_00325
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Entry
NP440_00325 CDS
T08799
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oon
Oceanobacillus oncorhynchi
Pathway
oon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NP440_00325 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oon03400
]
NP440_00325 (mfd)
Enzymes [BR:
oon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NP440_00325 (mfd)
DNA repair and recombination proteins [BR:
oon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NP440_00325 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
AAA_22
DUF3638
UB2H
Motif
Other DBs
NCBI-ProteinID:
UUI40099
LinkDB
All DBs
Position
61043..64561
Genome browser
AA seq
1172 aa
AA seq
DB search
MKAIHNYLKSQEDIQSIMDGLLAGMKEQMVAGLSGSARSLLLSTIHQSMNRPLLIVTHQL
AQAQQLYDDLAELANEEGVYLYPVNELIASEMAVASPELRAQRIEALTAWTQKDKGILIA
PVAALKRMLPPKAYWNKYQLLFQTGKDIEVEAYLRSLVEMGYEGASMVTAPGEFSQRGGI
IDIYPITEEHPIRIELFDEEVDSIRYFDAESQRSLDKVEEVIIHPATELLIDKQEMVKVA
ERLEDALSDTLKKVKKPSDQEELVEVIEQDIEQFKQLNRFQGMYKYIGYLYDEPASLLDY
LPRNGVVFFDEMSRIQETATNLDHEELEWYTGLLEGNKMVQGSQFSFGWNTLIDGISHSR
VYMSVFMRHIPNTNPQNIINLSTRTMQEFHGQMPLFKNELKRWEKGDYSVVILTPNEQRA
EKVHSILEDYDIETQVEKELKLPIQKPTVIVGQLHSGIEFPMHKLAIITENELFKQRTKR
SRKQPKITNAERIKNYQELKVGDYVVHANHGVGKYLGIETLEVNKLHKDYMLIRYSGDDK
LFVPIDQIDLVQKFVGSEGKEPKLYKLGGTEWTKVKRKVQRSVEDIADDLIKLYSERESR
QGYAFSPDSELQREFEASFAYQETEDQLRCITEIKEDMEKVKPMDRLLCGDVGYGKTEVA
IRAAFKAVADGKQVAILVPTTILAQQHYETIRERFQDYPVNIGLLSRFRTRKQSNETVKG
LEDGNMDIVVGTHRLLSKDVKYKDLGLLVVDEEQRFGVKHKEKIKQLKTNVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNPSFIREAVDREMSRGGQVFFLHNR
VENIEKTARDIGMLVPNAKVAIAHGQMNESELENVIFGFIEGEFDILVSTTIIETGVDIP
NVNTLIVNHADRMGLSQLYQLRGRVGRSNRVAYAYFTYQRDKVLTEVAEKRLQAIKEFTE
LGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLKDAIDARKEGKEVEDIKPF
EPEISLKIDAYIPDEYLNDEKQKIEMYKQFQNVDSPEAVQDLRDELIDRFGDYPAEVENL
FTVSIMRMHAKKQRVQSITEAPQKITMLLDEERSQEIDGSKLFEAANQFDRQVSLGTENQ
NLKAGIKWSKDKAYKRHDTVIEFIKKLSDVNR
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcaattcataattatttaaaatcacaggaagatattcagtcgattatggatgga
ttgctggcaggcatgaaggagcagatggttgccggcttaagcggctctgctagaagcctg
ctcttatccaccatacatcaatccatgaatcgtcctttattaattgttacccatcagctc
gctcaggcacagcagctgtatgatgatttagcagagctggcaaatgaggagggggtatat
ctttatcctgtcaacgagttaatagcctccgaaatggctgtagcgagccctgaattgcgc
gctcagcggattgaagcattaactgcttggacacagaaagataaagggatactaatcgct
cctgttgcagcattaaaaagaatgctgccgccaaaagcatattggaataaatatcagctt
ctatttcaaacaggaaaagacattgaggtagaggcctatctgcgttccttggtggaaatg
ggctatgaaggcgcctcaatggttaccgcccctggtgaatttagccagcggggaggaatt
attgatatttatccaattacggaggagcatccaatccggattgagctatttgatgaagag
gtagattctatccgctattttgatgcggagtcacagcgttctttagacaaagtagaagag
gtaataatccaccctgctacagaattattgatagataaacaagaaatggtgaaagtagca
gaacggctagaggatgccctttcagatacattgaaaaaagtcaaaaaaccttctgatcaa
gaagagcttgtggaggttattgaacaagatattgaacaatttaaacaattaaaccgtttc
caggggatgtataaatacattggctatttatatgacgagccagctagtttgttagactat
ttgccgcggaatggggttgtcttttttgatgaaatgagccgtattcaggaaacggcgacc
aatttagatcatgaagagctggaatggtatacggggctgctggaaggaaataaaatggtc
cagggcagtcaattttcttttggatggaatacattgatagacggtatttcccattctcgt
gtatatatgtctgtgtttatgcggcatattccaaatacgaacccgcaaaatattattaat
ctatcgacacgaacgatgcaggaatttcatgggcagatgcctttatttaaaaatgaatta
aagcgctgggaaaagggagattactcggttgttattctgacaccaaatgaacagcgcgca
gaaaaagtacattctattttagaagattatgatattgaaacacaggtggaaaaagaatta
aaactgccgatacaaaagccgaccgttatcgtggggcagttgcattcgggaattgaattc
ccgatgcataagctggcgattatcaccgaaaatgaattgttcaagcagcgcacgaagcgt
tctagaaaacagccaaagattacgaatgcagagcgcattaagaattatcaagagctcaag
gtcggcgattatgtagttcatgcaaatcatggtgtcgggaaatatctcgggattgaaacg
ttagaagttaacaaactgcataaggattatatgctgatccgttactctggagacgataag
ctgttcgtgccaattgatcaaattgatttagttcagaaatttgtcggttctgaaggaaag
gaaccgaagctatataaattaggcggtacggaatggacaaaggtaaaacgcaaagttcag
cgatctgtggaagacattgctgatgatttaatcaagttatattcggagcgtgaatcccgg
caaggctacgctttctcaccagattctgaattacagcgtgaatttgaagcgtcctttgcc
taccaggagacagaggatcaactgcggtgtatcacagaaatcaaagaggatatggaaaaa
gtaaaaccaatggaccgcttgctctgtggggacgttggttacgggaaaacagaggttgct
atccgtgctgctttcaaagcagtggcagatggaaagcaggttgctattctggtgccgaca
acgattctggcacagcagcattatgagacaattcgcgaaagattccaggattacccggta
aacattggtttattaagccgtttccgcacgcgtaagcaatccaatgaaacggtaaaaggg
ctggaagatggaaatatggatattgttgtagggacacatcgtctgttatcaaaggatgta
aaatacaaggatttaggcttgcttgttgtcgatgaggaacagcggtttggtgtgaagcac
aaggaaaaaatcaaacagctgaagaccaatgtcgatgttttaacgctgacagcaacgcct
attccaagaacacttcatatgtccatgctgggagtaagggatctatctgttattgaaacc
ccccctgaaaacagatttccgattcaaacctatgtgatggaatataatccatcctttatt
cgggaagctgttgatcgggaaatgtccagaggggggcaggttttcttcctgcataacaga
gtagaaaatattgagaaaacagcccgcgatattggcatgcttgtaccaaatgccaaggta
gccattgcgcatggacaaatgaatgaatccgaactggagaatgttattttcggtttcata
gaaggggaatttgatattttagtcagtacgaccattattgaaacaggggtggacatcccg
aatgtgaatactttgattgtcaatcatgccgatcgtatggggctgagccagctttaccaa
ttaagaggccgtgtcgggcgttctaatcgtgtagcttatgcttatttcacgtatcagcgt
gataaggtattaacagaggtggctgagaaacgattgcaggccattaaagaatttacagag
ctcggctctggatttaagattgcgatgcgcgatttgtctattcgcggtgctggaaattta
ctcggcgcacagcagcacggatttattgattcagttgggtttgatatgtattctcaaatg
ctgaaggatgcaatcgatgcccgcaaagaaggaaaagaagtagaagatattaagccgttt
gaaccggagatttcattaaaaatcgatgcatatattccggatgaatacttgaatgatgag
aaacagaaaattgaaatgtataagcaattccaaaacgtggatagcccggaagcagtccag
gatttaagagacgaattaattgaccgcttcggagattatcctgcagaagtcgaaaattta
ttcacggtaagcattatgagaatgcatgcgaagaaacagcgtgtgcaatccattacagaa
gcgccgcaaaaaatcacgatgctgctcgatgaagaaagaagtcaggaaattgatggctct
aaattatttgaagcggcgaatcaatttgatcgtcaagtcagtctgggcaccgaaaatcaa
aacttaaaagcaggtattaaatggagcaaagacaaggcttataaacggcacgataccgtt
attgaattcattaaaaaattaagcgatgtgaatcgttaa
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