Oceanobacillus oncorhynchi: NP440_05620
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Entry
NP440_05620 CDS
T08799
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
oon
Oceanobacillus oncorhynchi
Pathway
oon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NP440_05620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oon03019
]
NP440_05620
03009 Ribosome biogenesis [BR:
oon03009
]
NP440_05620
Enzymes [BR:
oon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NP440_05620
Messenger RNA biogenesis [BR:
oon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NP440_05620
Ribosome biogenesis [BR:
oon03009
]
Prokaryotic type
rRNA helicases
NP440_05620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
baeRF_family6
UBA_NBR1_C
Motif
Other DBs
NCBI-ProteinID:
UUI41065
LinkDB
All DBs
Position
1129231..1130712
Genome browser
AA seq
493 aa
AA seq
DB search
MTKFNELGVSAPIMKALEEMGFEEATPIQAETIPYALEGHDVIGQAQTGTGKTAAFGIPL
INKIDPKLKKVQGLIVAPTRELAIQVAEEINRLSKFKRIRALAIFGGSPMDRQIRALKDG
PQIVVATPGRLMDHMRRKTIRIDEVHTAVLDEADEMLNMGFIDDIREILKGIPEDRQTLL
FSATMPKEIRDIATTLMKEPKEVKVKAKEMTVENIDQYFIEIPEKFKFETLNNHLDINSP
ELAIVFARTKKRVDEITEGLQARGYRAEGIHGDLTQGKRMSVLNKFKQGRVDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGEAISFITPREMAHLSLIEKTTK
SKMKRLTPPTNQDARRGQQQVTIDKMKKAIDQKDLNPYYEAAKELLDDHDSVTVIAAAIS
MMTKERRDTPVRISSAAPISVKKAKEDNRRGNNKKRYYGGRGQGGRNQGGRNQGGRNRKN
NKGNFQRKRRDDR
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
gtgactaaatttaacgaactaggcgtttctgcgccaataatgaaagctttagaagaaatg
gggtttgaagaagctaccccgattcaagcagaaacgattccatacgcgctggaaggacac
gatgtgattggacaagcgcaaacaggtacagggaaaaccgcagcattcggtatcccattg
attaataaaatcgatccaaaactgaaaaaggttcagggtttgatcgttgcaccgacacgt
gagctggcaattcaggtagcggaagaaattaaccgtctatctaaattcaagcggatacgg
gcacttgctattttcggtggttctccaatggaccgccaaattcgagcattaaaagacggc
cctcaaatcgttgtagcaacaccaggacgattaatggatcatatgcgccgcaaaacgatt
cgtattgatgaagtgcatacagcagttctcgatgaagcagatgaaatgctgaacatgggc
tttattgatgatattcgcgaaattttaaaaggtattccagaagatagacaaacattgctt
ttctctgcaactatgccgaaggaaattcgtgatattgcgacaacgcttatgaaagagcca
aaggaagttaaagtaaaagcgaaagaaatgacagtagagaacattgatcaatattttatt
gagattccagagaagtttaagtttgaaacactaaataaccatttggatatcaattctcct
gaattggctatcgtttttgcaagaacgaaaaaacgtgtagatgaaatcactgaagggctt
caagcaagaggttatcgcgcggaaggaatccatggagacttaacacagggtaagcgtatg
tctgtattgaataaatttaaacagggacgggtagacgttcttgtggcaacagacgtagca
gcccgcggactggatatttccggtgtaacacatgtgtacaattttgatatcccacaagat
ccggaaagctatgttcaccgtattggaagaactgggcgagctggtaaaacaggggaagct
atctccttcatcacaccaagagaaatggctcatctcagcctgattgaaaaaacaacaaaa
agtaaaatgaagcgtctgacgcctcctactaaccaggatgcgcgacgcggacaacagcaa
gtaaccattgataaaatgaaaaaggcgatcgatcaaaaagatttgaacccttattatgaa
gcggcgaaagaattacttgatgatcatgattccgttacggttattgctgctgcaatcagc
atgatgacaaaagaaagaagagatacacctgtacgcatttcctctgctgcaccaatcagt
gtgaaaaaagcgaaagaggataaccgtcgtggaaataataaaaaacgttattatggcgga
cgtggccaaggtggacgcaatcaaggcggaagaaaccagggcggcagaaaccgcaaaaat
aataaagggaatttccagcgtaaaagaagagacgaccgttaa
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