Oceanobacillus oncorhynchi: NP440_14155
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Entry
NP440_14155 CDS
T08799
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
oon
Oceanobacillus oncorhynchi
Pathway
oon02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
oon00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NP440_14155 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oon03021
]
NP440_14155 (rpoD)
Transcription machinery [BR:
oon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NP440_14155 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
AhpC-TSA
DUF1118
Motif
Other DBs
NCBI-ProteinID:
UUI42245
LinkDB
All DBs
Position
complement(2847385..2848476)
Genome browser
AA seq
363 aa
AA seq
DB search
MKEPELTLEQAKEKLVDMGKKRGTLAYEEVADGLSNFDMEPEQMDEFYEYLEEQGVDVLG
ESEDDPEMQKIAKEEEINLNDLSVPLGIKINDPVRMYLKEIGRVDLLSAAEEIELASRIE
EGDIEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFST
YATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGREPTPEEIGEEMEL
SPDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHAAYELLKEQLEDVLD
TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKD
FLD
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacccgaactgacattagagcaagcaaaagaaaaattggttgacatgggtaag
aaacgcggtacacttgcgtatgaagaagtggctgacggtttatctaattttgacatggaa
cccgaacaaatggatgagttttatgagtatctggaagaacagggtgtcgatgtgttaggt
gagtctgaggatgaccccgagatgcagaaaatcgcaaaagaagaagaaatcaacctgaat
gatctcagtgttcctttagggataaagatcaatgacccggtccgtatgtatttaaaagaa
atcggcagagtagacctgctttctgcagcagaagaaattgaactcgcttcccgaattgaa
gagggagatattgaagcaaagagaaggttagcggaagccaatcttcgtctcgttgtcagc
atcgcaaaacgctatgttggacgggggatgcttttcctcgatttgattcaagaaggaaac
atgggtctgatcaaagctgttgagaaatttgactaccgcaaagggtttaaattcagtacc
tacgcaacctggtggattagacaggcaattacccgtgcaatcgcggaccaggcccgtacc
attcgtatcccggttcatatggtggaaaccattaataaattaatccgtgtacagcgctct
ctgctgcaggatctgggacgtgaaccgacaccggaggaaatcggcgaagaaatggaatta
agcccggataaggtgcgcgacattctaaaaatcgctcaagaacctgtatctttagaaaca
ccaatcggagaagaagacgattcacatctaggtgatttcattgaggatcaggaagcaatc
tctccatccgatcatgcagcttacgaattactgaaagaacagctggaagatgtattagac
acattgacagacagagaagaaaatgtgcttcgtctgcggtttggattagatgatggaaga
acgagaacacttgaagaagtagggaaagtatttggggtaaccagagaacgtatccgccaa
atcgaagcgaaagcattacgtaaattaagacacccaagccgaagcaagcgattgaaagac
ttccttgattaa
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