Oceanobacillus oncorhynchi: NP440_20290
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Entry
NP440_20290 CDS
T08799
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
oon
Oceanobacillus oncorhynchi
Pathway
oon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NP440_20290 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oon03021
]
NP440_20290 (rho)
03019 Messenger RNA biogenesis [BR:
oon03019
]
NP440_20290 (rho)
Transcription machinery [BR:
oon03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NP440_20290 (rho)
Messenger RNA biogenesis [BR:
oon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NP440_20290 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
Spore_III_AA
AAA
AAA_22
ATPase_2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UUI39631
LinkDB
All DBs
Position
complement(4190740..4192023)
Genome browser
AA seq
427 aa
AA seq
DB search
MATLTISSLETMTLKEIYALAKDYKISYYAKLTKKELIFAILKAQAEKDGFLFMDGILEI
IPSEGFGFLRPINYSPSAEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVDA
VNDEDPDSSKERVHFPALTALYPNRPIRLETETNQLSTRIMDLMTPVGFGQRGLIVAPPK
AGKTMLIKEIANSISQNHPHAKLIILLVDERPEEVTDIERSVGPDVDVVSSTFDEVPESH
IKVSELVLERAMRLVEHKRDVIVLMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKR
FFGAARNIEEGGSFTILATALVDTGSRMDDVIYEEFKGTGNMELHLNRHLADRRIFPAID
ILRSGTRKEELLVDKAHLDKMWLLRKTMQDSNDFLDRFLKRMKNSKNNEEFLQLMDEEMK
RKGMNRQ
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcaacactaacaatctctagtttagagacaatgacgttaaaagagatttatgcactt
gcgaaagattataaaatttcatattacgcaaagctgacaaagaaagagctaatttttgca
atattaaaagcgcaggcggaaaaagatggatttttatttatggatggaatcttagaaatt
attccttctgaagggtttggtttcctgcgtccaatcaactattctccaagtgcagaggat
atctatatctctgcttcccaaatccgtcgttttgatttgagaaatggagataaagtatcc
ggaaaggtacgtccgccaaaggaaaacgaacgttattacggtctgttgcatgtcgatgca
gtgaatgatgaagacccggattcttccaaagaacgtgtccattttccagctttaacagca
ctttacccaaatcggccaatcagattagaaacagaaacaaaccagttatctacacgtatt
atggatttaatgacaccagtcggttttggacagcgcggtttgattgtcgcgccgccaaaa
gctgggaaaacgatgctgattaaagaaattgcaaacagcatctctcaaaaccatccgcat
gccaaactgattattctgctggtggatgagcgtccagaggaagtaaccgatattgaacgt
tctgtaggtccggacgttgatgtcgtttcctctacttttgacgaagttcctgagagccat
atcaaagtgtcggagcttgtgttagagcgtgctatgcgtcttgtcgagcacaagcgtgat
gtcatcgttctgatggatagcattacacgcttggcccgggcgtataacttagttattcct
ccaagcggacgtaccttatccggcggtatcgatccggcagccttccaccgtccaaagcga
ttctttggtgcggcaagaaatattgaagaaggcggcagctttaccattttagcgacagcg
ctggtagacaccggttcacgtatggatgatgtgatttatgaagaatttaaaggaacaggg
aatatggagctgcacctgaatcgtcatcttgcagaccgccgaatcttccctgctatcgat
attctgcgttcaggaacccgtaaagaagagctcttggtagataaagcacatttagataaa
atgtggctgctgcggaaaaccatgcaggattccaatgatttcttagaccgcttcttaaaa
cggatgaagaattctaagaataatgaagaattcctgcagctgatggacgaagaaatgaaa
cgaaaaggaatgaatcgtcaatag
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