Oceanobacillus oncorhynchi: NP440_20535
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Entry
NP440_20535 CDS
T08799
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oon
Oceanobacillus oncorhynchi
Pathway
oon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NP440_20535 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oon03019
]
NP440_20535 (recQ)
03400 DNA repair and recombination proteins [BR:
oon03400
]
NP440_20535 (recQ)
Enzymes [BR:
oon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NP440_20535 (recQ)
Messenger RNA biogenesis [BR:
oon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NP440_20535 (recQ)
DNA repair and recombination proteins [BR:
oon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NP440_20535 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
NMDAR2_C
Sigma70_r4_2
GerE
Motif
Other DBs
NCBI-ProteinID:
UUI39679
LinkDB
All DBs
Position
4244573..4246735
Genome browser
AA seq
720 aa
AA seq
DB search
MEKYLNILQNYFGYSSFRPGQAEVIDTIDQGENVLAVMPTGGGKSLCYQVPGLAMNGTAI
IISPLISLMKDQVDGLHALGAAATYINSSISAGEQYQRLMAMQQNRYQFVYVAPERFESG
AFIQALQQTNISLIAFDEAHCISQWGHDFRPSYRSIVPILQEIGGNPTVMGLTATATPEV
IEDIQALLHIAPANTVHTGFERKNLSFFIEKGVNKIDYILSYLKKHQGEVGIIYAATRKQ
VEHVYDVLKGKGYAVSKYHGGLSEQERQAAQTAFIFDQTELMVATTAFGMGIDKSNVRFI
IHYAIPMNMESYYQEAGRAGRDGEPSNCVLLFSPQDIHTQKFLIEKSDLDEEGTQREYQK
LNKMVNYCRTQNCLYSYILNYFEMGSAASSVSCGRCSNCLKQGELEDITEEAQMILSCVK
RMRERFGASMTAKVLKGSKDKKLIQFGLSKLSTYGILSKYTEKEITERIHFLIAEECLSA
EEGQFPVLKLNRKSMDILTGKENVTMFIQDVPAVSETDYSDDLFESLRQLRRSMSQELDL
PPYVLFSDMTLKEMARYLPEDKDEFLRLKGVGQKKYDLYGEAFLEAVAEWKEKNPDYKAP
TAIHYQKAAKAKDADDRPSYQISYELLQKGKTIREIASIRDLKELTIESHIFQAFHKGYT
LNWNLFFNTEEEGKILSKHEEIDPTGLKELKEALPEDYTYRKIKAVLVKNDKFMAKEKSS
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagtatttaaatattttacagaattactttggttactccagttttcggcctgga
caagctgaagttattgatacaattgatcaaggtgaaaatgtccttgctgtgatgccgacc
ggtggcggaaaatcactctgttatcaagtacccgggcttgcgatgaacggaacagcaatt
atcatttcaccgcttatttcactgatgaaggaccaagttgacggactgcatgccctcggg
gcagcagcaacttatattaacagctccatttctgcaggtgagcagtatcagcgtttaatg
gcgatgcagcaaaatcgctatcaatttgtttatgttgctccagagcgttttgaatcaggg
gcttttattcaagccttgcagcagactaatatatctctgattgcctttgatgaggcgcac
tgtatatcccagtggggtcatgatttccgtccaagctaccgctctatcgttcctattctc
caggagattggcggcaatccaacggttatggggcttaccgcgacagcgacccctgaagta
attgaagacatacaggctcttttacatatcgctcctgcaaatacagtgcatactggcttt
gaaagaaaaaatctttccttctttatcgaaaaaggggtaaataaaatagattatattctt
tcctatctgaaaaaacatcagggagaagtcggtattatttatgcagcaacacgaaaacag
gtcgaacatgtctatgatgtcctaaaagggaaaggttatgctgtatccaagtaccacggc
ggattgtccgagcaggaacggcaggctgcgcaaacggcctttatctttgaccagacagag
ttgatggttgctacgactgcgtttggaatggggattgataaatcaaatgtccgctttatt
attcattatgccattccgatgaatatggaatcgtattatcaggaagcaggaagagcagga
cgcgacggcgagccgagcaactgtgtcctgcttttctctcctcaagatatccatactcaa
aaatttttgattgagaaatccgatttggatgaagaaggaacacagcgggaatatcaaaaa
ttgaataaaatggtgaactactgtcgtacacaaaactgcttatacagttatattttaaac
tatttcgagatggggtcggccgcatcttctgtatcttgcggacgctgcagcaattgcctg
aagcaaggagagttagaggatattaccgaagaagcgcaaatgattttatcctgcgtgaag
cgcatgcgtgaacgctttggcgcttccatgacagcgaaagttttaaaaggttcaaaggat
aaaaagctgattcagtttggcttatcgaaattatctacttacggcatcttatccaaatat
acggagaaggaaattacagaaagaatccacttcttaatcgctgaagaatgcttatccgca
gaggaagggcagtttcctgttttaaaactaaaccggaagtccatggacatcctgaccgga
aaagagaatgttaccatgtttatccaggatgtccctgctgtcagtgaaacagattacagt
gatgatctctttgaatcactgcgccagttaagaagatcgatgtctcaggagctggatttg
ccaccttatgtgctgttttcagatatgacattaaaagaaatggcccgctatcttccagaa
gataaggatgaattcttacggttaaaaggagtaggacaaaagaaatatgacctctatgga
gaagccttcctggaagctgttgccgaatggaaagaaaaaaacccggattacaaagcccct
actgccattcattatcaaaaggctgcgaaagcaaaggatgcggatgaccggccgtcctat
caaatatcatatgagctcctgcaaaaaggaaaaacgattcgagaaattgcttccatccgg
gatttaaaagagctgaccattgaatcacatatttttcaggctttccacaagggatatacg
ctgaattggaatctattctttaataccgaggaagaaggcaaaattttatccaagcacgaa
gaaattgatccaactggattgaaggagctgaaagaggctctgccggaagattacacctat
cgcaaaatcaaagcagttctagtaaagaatgataagtttatggcgaaagaaaaaagctct
taa
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