Orcinus orca (killer whale): 101269242
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Entry
101269242 CDS
T05247
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X2
KO
K12821
pre-mRNA-processing factor 40
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101269242 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oor03041
]
101269242 (PRPF40A)
Spliceosome [BR:
oor03041
]
Complex A
U1 snRNP components
U1 related factors
101269242 (PRPF40A)
Complex B
101269242 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
101269242
NCBI-ProteinID:
XP_004276852
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All DBs
Position
7:complement(42937392..42992347)
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AA seq
1035 aa
AA seq
DB search
MQATPSEAEAGGESPKSCVSAAQSDWTAGKPVSLLAPLIPPRSAGQPLTFSPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESHPPSRGPGDGERRLSGSSLCSS
SWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMP
GMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTSGAKSMWTEHKSPDGRTYYYNT
ETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGY
QNTIVAGSLITKSNLHAMIKAEESSKQEECTTSTAPVPTTEIPTTMSTMAAAEAAAAVVA
AAAAAAAAAAAANASASTSASSTVGGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQL
TSTPAVQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKE
LLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKE
AKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQ
AKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFE
EHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISS
DIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAI
ISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIE
LDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHH
RKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHK
SDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGEL
EKRRRTLLEQLDDDQ
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagtgaggctgaggctgggggcgaatcgccgaagagctgcgtgtcg
gcagcgcagtctgattggacagcggggaagcctgtcagcttattggccccgctgatcccg
ccccgtagcgcagggcagcctttaacctttagccccagtgggcgccagccactcagatcg
cttcttgttggtatgtgtagcggcagtggccgccggcggagcagtctgagtccgacgatg
aggccggggacgggagccgagcgtggaggcctcatggtgagtgaaatggagagccatcct
ccctcgcggggtcccggggacggggagcggagattgtccggctcaagcctctgctccagc
tcttgggtctctgctgacggcttcctgaggagacggccctcgatggggcaccctggcatg
cattatgccccaatgggaatgcatcctatgggtcagagagcgaacatgcctcctgtacct
catggaatgatgccgcaaatgatgcccccaatgggaggaccaccaatgggacaaatgcct
ggaatgatgtcttcagtaatgcctggaatgatgatgtctcacatgtctcaggcttccatg
cagcctgccttaccgccaggagtaaataatatggatgtagcagcaggtacaacatccggt
gcaaaatcaatgtggactgaacataaatcacctgatggaaggacctactactataatact
gaaaccaaacagtctacttgggagaaaccagatgatcttaaaactcctgctgagcaactt
ttatctaaatgcccttggaaggagtacaaatctgactctggaaagccttactattacaat
tctcaaacgaaagaatcccgctgggcgaaacctaaagaacttgaagatcttgaaggatac
cagaataccattgttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaa
gctgaagaaagcagtaaacaagaagagtgcaccacatcaacagccccagttcctacaaca
gaaattccaaccacaatgagcaccatggctgctgcagaagcagcagctgctgttgttgct
gcagcagctgcagcagcagcagctgctgctgcagccaatgcaagtgcttccacctctgct
tctagtactgtgggtggaactgttccagttgttcctgagcctgaggttacttcgattgtt
gctactgttgtagataatgaaaatacagtaacaatttcgactgaagaacaagcacaactt
actagtacccctgctgttcaggatcaaagtgttgaagtgtctagtaatactggagaagaa
acatctaagcaggaaactgtagctgattttactcccaaaaaggaggaggaagaaagccaa
ccagcaaaaaaaacatatacttggaatacaaaggaggaagcaaagcaagcatttaaagaa
ttattgaaggaaaagcgggtaccatctaatgcttcatgggagcaagctatgaaaatgatc
attaatgatccacgatacagtgctttagcaaagttgagtgaaaaaaagcaggcctttaat
gcttataaagtccagacagagaaagaagaaaaagaagaagcaagatccaaatacaaagag
gctaaggaatcctttcagcgttttcttgaaaatcatgaaaaaatgacttccacaactaga
tacaaaaaagcagagcaaatgtttggagagatggaagtctggaatgcaatatcagaacgt
gatcgtcttgaaatctatgaagatgttttattctttctttcaaaaaaagaaaaggaacaa
gcaaagcagttgcgaaagagaaattgggaagccttaaaaaacatacttgacaacatggct
aacgtgacatactctactacttggtctgaagcccagcagtatctgatggataatccaact
tttgcagaagatgaagaattacagaacatggataaagaagatgcgttaatttgctttgaa
gaacacattcgggctttagaaaaggaagaagaagaagaaaaacagaagagtttgcttcgg
gaaaggcgacgacagcgtaaaaacagagaatcttttcagatatttttagatgaactgcat
gaacatggacaactgcattctatgtcatcttggatggaattgtatccaacaattagttct
gacattagattcactaatatgcttggtcagccgggatcaactgcacttgaccttttcaag
ttttatgttgaggatcttaaagcacgttatcatgatgagaagaagataataaaagacatt
ctaaaggataaaggatttgtagttgaagtaaatactacttttgaagactttgtggcaata
atcagttcgactaaaagatcaaccacattagatgcaggaaatattaagttggctttcaat
agtttactagaaaaggcagaagcccgtgaacgcgaaagagaaaaagaggaggctcggaag
atgaaacgaaaagaatctgcatttaagagtatgttgaaacaagctactcctccaatagaa
ttggatgctgtctgggaagatatccgggagagatttgtaaaagagccagcatttgaggat
ataactctagagtctgaaagaaaacgaatatttaaagattttatgcatgtgcttgagcat
gaatgtcaacatcatcattcaaagaataagaaacactctaagaaatctaaaaaacatcac
aggaaacgctcccgctctcgatcaggatcagattcagatgatgatgacagccattcaaag
aaaaaaagacagcgatcagagtctcgttctgcttcagaacattcttctagtgctgaatct
gagagaagttataagaaatcaaaaaaacataagaagaaaagcaagaagagaagacataaa
tctgactctccagagtcagatgctgaacgggagaaggataaaaaagaaaaagaccgggaa
agcgaaaaagacagaactagacaaagatcagagtcaaaacacaaatcacctaagaaaaag
actggaaaggattctggtaattgggatacttctggcagtgaactgagtgaaggggaattg
gaaaagcgtagaaggacccttttggagcaactggatgatgatcaataa
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