Orcinus orca (killer whale): 101269469
Help
Entry
101269469 CDS
T05247
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X4
KO
K13126
polyadenylate-binding protein
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03015
mRNA surveillance pathway
oor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101269469 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
101269469 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oor03019
]
101269469 (PABPC1L)
03041 Spliceosome [BR:
oor03041
]
101269469 (PABPC1L)
Messenger RNA biogenesis [BR:
oor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101269469 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
101269469 (PABPC1L)
Spliceosome [BR:
oor03041
]
Complex C
Other components
Complex C specific factors
101269469 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_10
RRM_5
RRM_Nup35
RBD_DEAH11
RRM_3
RRM_MARF1
Motif
Other DBs
NCBI-GeneID:
101269469
NCBI-ProteinID:
XP_004272938
LinkDB
All DBs
Position
16:complement(16192911..16217738)
Genome browser
AA seq
330 aa
AA seq
DB search
MNSSGPGYPLASLYAGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKPRRERD
AELGARAMEFTNIYVKNLHVDVDEQCLQDLFSQFGKILSVKVMRDDGGHSRGFGFVNFET
HEEAQKAVMDMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKN
LDDSIDDEKLRKEFSPYGVITSAKKRRRRP
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgaactccagcggcccgggttacccgctcgcctcgctctacgcgggcgacctgcacccc
gacgtgactgaggccatgctctacgagaagttctcgcccgctggccccatcctgtccatc
cgtgtgtgccgcgacgtggccacccgccgctcgctgggctacgcctacatcaacttccag
cagccggccgacgcggagcgggcactggacacaatgaactttgaggtgatcaaaggccag
cccatccgcatcatgtggtcccaacgagacccaggacttcgcaagtcgggtgtcggcaac
atcttcatcaagaacctggaagactccattgacaacaaggccttgtacgacaccttctcc
acctttgggaacatcctctcttgcaaggtggtgtgtgatgatcatggctcccgaggcttt
ggctttgtgcattttgagacccacgaggctgcacagaacgccatcagcaccatgaacggg
atgctgctgaatgaccgcaaagtcttcgttggccacttcaagccccgacgggagcgggat
gcagagctgggagctcgggccatggagttcaccaatatctacgtgaagaacctccacgtg
gacgtggatgagcagtgcctgcaggacctcttctcccagtttgggaagatactgagtgtc
aaggtgatgagggatgacggcggccactcccgcggctttggctttgtcaactttgagacg
catgaggaagcccagaaggctgtgatggacatgaacgggagggaggtgagtggacggctg
ctctacgtaggccgggcccagaagcgggtggagcggcagaatgagctgaagcgcaggttc
gagcagatgaagcaggaccggctgacccgttaccagggcgtgaacctgtatgtgaagaac
ttggatgactccatcgatgatgagaaactgaggaaagagttctctccctatggagtgatc
accagtgccaagaagaggcgacgaaggccgtga
DBGET
integrated database retrieval system
