Orcinus orca (killer whale): 101269478
Help
Entry
101269478 CDS
T05247
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101269478 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oor03041
]
101269478 (DDX42)
Enzymes [BR:
oor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101269478 (DDX42)
Spliceosome [BR:
oor03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101269478 (DDX42)
Complex B
101269478 (DDX42)
Complex C
U2 SnRNP specific factors
101269478 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
101269478
NCBI-ProteinID:
XP_012390554
LinkDB
All DBs
Position
19:complement(36112414..36165290)
Genome browser
AA seq
938 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSGFGKSAPPQLPSFYK
IGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFMA
EVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNL
EYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNL
RVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGS
GKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVY
GGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQV
RSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSG
PSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHSLGLLHGDMDQSERNKVI
SDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL
LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR
ERPGLGSENTDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLTNQK
AGSSAAGASGWTSAGSLNSVPTNSAQQQGHNSPDSPIASATKGIPGFGSTGNLSSAPVTY
PSAGAQGVNNTASGNNSREGIGGGNGKRERYTENRGGSRHSHGESGNRHGDSPRHGDGGR
HGEGYRYPESSSRHADGRRHADGHPHGENRHGGGGGRHGESRGANDGRNGESRKEICNRE
SKVDPKVDSTKMDSKTDKTTDGFAVPEPPKRKKSRWDS
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcactaagaggggatttggctttggaggtttcgct
attagtgcgggaaagaaggaggaaccgaaactcccacagcagtcccatagtgcctttggg
gcaaccagctcttctggatttggaaagtcagctccaccacagctcccttccttctacaaa
attggttctaaacgggccaactttgatgaagaaaacgcatattttgaagacgaggaagaa
gattctagcaatgttgatttaccttacattcctgctgaaaactcacctacccgccagcaa
ttccattccaagccagtagattctgatagtgatgatgatcccttagaggcattcatggct
gaagtggaggatcaagcggctagagacatgaagaggcttgaagaaaaggacaaggaaaga
aaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttatttt
cggtacatggcagagaatccaactgctggcgtggttcaggaggaagaggaggataatttg
gaatatgatagtgatggaaatccaattgcaccttccaaaaaaatcattgatcctcttcct
cccattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgaacat
gaagagataaccaacctcaccccacagcagctaatagatctccggcataagctcaatctt
cgggtttctggtgctgcacctcctagaccaggaagtagttttgctcattttgggtttgat
gagcaacttatgcaccagattcggaaatctgagtacacacagcccactccaatacagtgc
cagggtgtacctgtggcattaagtggtagagacatgattggtattgccaaaacaggcagt
gggaaaactgcggcctttatctggcccatgttgattcatataatggaccagaaagaattg
gaaccgggtgatggaccaattgcagtgattgtgtgtcctactagggagctttgtcagcag
atccacgcagaatgcaagcggtttgggaaagcgtataatctccgatcagtagccgtgtat
ggaggagggagcatgtgggagcaggccaaggcccttcaggaaggggcagagattgttgtc
tgtacaccaggtcgacttattgatcatgtgaagaagaaagctaccaaccttcagagagtc
tcttaccttgtatttgatgaagcagatcgaatgtttgacatgggatttgagtaccaggtg
cgatccatagcaagtcatgtccgtcccgacagacagactctcttattcagtgcaactttt
cggaaaaagattgaaaaactggccagagacatcctgattgaccctattcgtgtggtgcag
ggggatattggagaggcaaatgaagatgtgactcagattgtggagattctgcattctggg
cctagtaaatggaactggctcacccggcgtctggtggagtttacctcttcaggaagtgtc
ctcctgtttgttactaaaaaagccaatgctgaagagctagccaataaccttaaacaggag
ggtcatagtcttggcctgctccatggtgacatggatcagagtgaaagaaacaaggttatt
tcagactttaagaaaaaggacatcccagtcctcgtggccacagatgttgcagcccgtggt
ctggacattccttcaattaagactgtcattaactatgatgtggcacgagatattgatacc
catacgcataggattggccgaacaggacgagcgggtgagaaaggcgtggcctataccttg
ctgacacccaaggatagcaattttgccggtgaccttgtccggaacttggaaggagccaat
cagcatgtttccaaggaactcctagatctggccatgcagaatgcctggtttcggaaatcc
cgcttcaaaggagggaaagggaaaaagctgaacattggtggaggaggcctaggctatagg
gagcggcctggcctcggctctgagaacacggaccgaggaagtaacaacaatgtaatgagc
aattatgaggcctacaagccctccacaggagccatgggagatcggctgacggcaatgaaa
gcagctttccagtcacagtacaagagtcactttgttgctgccagtttaaccaaccagaag
gctggaagctctgctgctggggcgagtggatggactagtgcagggagcttgaattcagtt
ccaactaattcagcccaacaacagggccataacagtcctgacagccccattgccagtgcc
acaaagggcatcccaggctttggcagtactgggaacctcagcagtgccccagtgacctat
ccttctgccggagcccagggagtcaacaacacagcttcagggaataacagccgagaaggg
attgggggtggcaatgggaaaagagagagatacactgagaaccggggtggaagccgtcat
agtcacggagagagtgggaatcggcatggcgatagcccacgtcatggagacggtggtcgc
catggagagggataccgctacccagaaagcagcagccgtcacgctgatgggcgccgtcat
gctgatggccatcctcatggagagaacaggcatggaggaggtggaggcagacatggagag
agccgaggtgcaaatgatggtcggaatggtgaaagcaggaaagaaatttgtaatcgtgaa
agcaaggtggaccccaaggtggacagcaccaagatggacagcaagacagataagactact
gatggcttcgctgtccccgagccacccaagcgcaagaaaagtcgatgggacagttag
DBGET
integrated database retrieval system
