Orcinus orca (killer whale): 101270136
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Entry
101270136 CDS
T05247
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X2
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101270136 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oor03400
]
101270136 (LIG3)
Enzymes [BR:
oor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101270136 (LIG3)
DNA repair and recombination proteins [BR:
oor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
101270136 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
101270136
NCBI-ProteinID:
XP_012389183
LinkDB
All DBs
Position
19:complement(384409..406054)
Genome browser
AA seq
1042 aa
AA seq
DB search
MTVCPPTKCIMLNVHLFVYIFREFRASPPWTYFNFPSHPVSCMTLAFKILLPPTLRALSQ
KELCLFREQHHWPDIRQFSRWSETVLHGHHLLQRRKPVVSFQESNLRPRATCLVFLPGSH
VGVCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWY
HIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQIIQHIADLSSKAANTPKKKAVV
QAKLTATGQVTSPVKGASFVTNTNPRKFSGFSAKPNNSGEAHSIPTPKTSLSSSKCDRKH
KDCLLREFRKLCAMVAENPSYNTKTQIIQDFLQKGSAGDGFHGDVYLTVKLLLPGVIKSV
YNLNDKQIVKLFSRIFNCNSDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVD
EFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAY
EAFKASRNLHDVVERVLRNEQEVKKEPGRKRALSVQASLMTPVQPMLAEACKSIEYAMKK
CPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILD
SEVLLIDNKKGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLFERRKFLH
DNMVEIPNRIMFSEMKQVAKASDLADMINRVIQEGLEGLVLKDVKGTYEPGKRHWLKVKK
DYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPSSQKWCTVTKCAGGHDDATL
ARLQKELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTAD
GISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKERAAFTIVAGDEGNSTTGGSSGENE
GISGPAVSHEAPRTSPKQPSASAKKAGGKLSSSNSKGGNKLAAKPSPVKVGEKRKAPDET
PCQAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLAQEFDVASATHVLGSRDKNPE
AQQVSPEWIWACIRKRRLVAPC
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgactgtctgtccccccacaaaatgtataatgctgaatgtgcacctttttgtatacatt
ttcagggagttcagagcctcccccccatggacttattttaattttcccagccatcccgtg
agctgtatgactttggcttttaagatcctcttaccaccaactctccgtgcgctcagccaa
aaagaactgtgcctattccgagaacaacatcactggcctgacataagacagttcagccgg
tggtcggaaacagttcttcatggacaccacctcctccagagaagaaagcctgttgtgtca
ttccaggaaagcaatctaagaccacgtgccacctgccttgttttcttgccagggtcgcat
gtgggagtctgcagtggcccctgtgagatggcagagcaacggttctgtgtggactatgcc
aagcgtggcacagccggctgcaaaaaatgcaaggaaaagattgtaaagggggtgtgccga
atcggcaaagtggtgcccaatcccttttcagagtcagggggcgatatgaaagagtggtac
cacattaagtgcatgtttgagaaactggagcgggcccgggccaccacaaaaaaaattgag
gacctcacagagctggaaggctgggaagagctggaagataatgagaaagaacagataatc
cagcacattgcagatctgtcttccaaggcagcaaacacaccaaagaagaaagctgttgtc
caggctaagttgacagccactggccaggtgacatctccagtgaaaggtgcctcatttgtc
accaataccaatccccggaaattttctggcttttcagcgaagcccaacaactctggggaa
gcccactcaatacctacccctaagacaagtctgtcctcaagcaaatgtgaccgtaagcac
aaggattgtctgctacgtgagtttcggaagttgtgtgccatggtggctgaaaatcctagc
tacaacacgaagacccagatcatccaggacttccttcagaaaggctcagcaggagatggt
ttccacggtgacgtgtacctaacagtgaagctgctgctgccgggtgttattaagagtgtt
tacaacttgaatgataagcagattgtgaagcttttcagccgcatttttaactgcaactca
gatgatatggcacgagacctagagcagggtgacgtgtcagagacaatcagagtcttcttt
gagcagagcaagtctttccccccagctgccaagagccttcttaccatccaggaggtggat
gaattcctcctgcggctctccaagctcaccaaggaggacgagcagcaacaggccctgcag
gacatcgcctccaggtgtacagccaatgaccttaagtgcatcatcaggttgatcaaacat
gatctgaagatgaactcaggtgcaaaacatgtgttagatgccctagaccctaatgcctat
gaagccttcaaagcctcgcgcaacctgcacgatgtggtggagcgggtcctccgcaacgag
caggaggtgaagaaggagccaggccggaaacgagctctgagtgtccaggcctcactgatg
accccggtgcagcccatgctggccgaggcctgcaagtccatcgagtacgcgatgaagaag
tgtccaaatggcatgttctctgagatcaagtatgatggggagcgagtccaggtgcataag
aacggggaccacttcagctacttcagccgcagtctcaagccagtcctgccgcacaaggtg
gcccactttaaggactacatcccccaggctttccccgggggccacagcatgatcttggac
tctgaggtgctcctgatcgacaacaagaaaggcaaaccactgccctttgggactctggga
gtgcacaagaaagctgccttccaggatgctaatgtctgcctgtttgtttttgattgtatc
tacttcaatgatgtcagcttgatggataggcctctgtttgagcggcggaagtttcttcac
gataacatggttgaaattcccaaccggatcatgttctcagaaatgaagcaagtcgcaaaa
gcttctgacttggctgacatgatcaaccgggtgatccaagaggggttggaagggctggtg
ctgaaggacgtgaagggtacatatgagcctggaaagcgtcattggctgaaagtgaagaag
gactatttgaacgagggggccatggctgacacagctgacctggtggtgcttggggccttc
tatgggcaagggagcaaaggtggcatgatgtccatcttcctcatgggctgctatgacccg
agtagccagaagtggtgcacagtcaccaagtgtgcaggaggccacgatgacgcgacgctc
gcccgcctacagaaggaactggacatggtgaagatcagcaaggatcccagcaagataccc
agctggctgaaagtcaataagatctactatcctgacttcatcgttccagaccctaagaaa
gctgcggtgtgggagatcacaggggctgaattctcgaaatctgaggcacacacagctgat
gggatctccatccgtttccctcgctgcacccgaatccgtgatgataaggactggaagtct
gccactaacctcccccaactcaaggaactgtaccagctctccaaggagcgggcggctttc
accatagtggctggagatgaggggaactccactacagggggcagcagcggagagaacgag
ggcatctcagggccagctgtgtctcacgaggccccgagaacctcccccaagcagccctcc
gccagtgccaagaaggcaggagggaagctgagtagctccaacagcaaaggcggcaacaag
ctggctgcaaagccttcccctgtgaaagtgggagagaagcggaaggctcctgatgagacc
ccatgccaagcaaaggtgctgctggacatcttcaccggggtgcggctctacctgccgccc
tccacgccagacttcagccgtctccgacgctactttgtggcattcgatggggacctggcg
caggaatttgacgtggcctcagccacacatgtgctgggtagtagggacaagaaccctgag
gcccagcaggtgtccccggagtggatctgggcctgtatccggaaacggagactggtagct
ccctgctag
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