Orcinus orca (killer whale): 101271333
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Entry
101271333 CDS
T05247
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03030
DNA replication
oor03410
Base excision repair
oor03420
Nucleotide excision repair
oor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101271333 (RFC1)
03410 Base excision repair
101271333 (RFC1)
03420 Nucleotide excision repair
101271333 (RFC1)
03430 Mismatch repair
101271333 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oor03032
]
101271333 (RFC1)
03400 DNA repair and recombination proteins [BR:
oor03400
]
101271333 (RFC1)
DNA replication proteins [BR:
oor03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
101271333 (RFC1)
DNA repair and recombination proteins [BR:
oor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
101271333 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
Rad17
AAA_14
BRCT_2
RuvB_N
AAA_5
AAA_33
AAA_7
AAA_30
AAA_16
AAA_18
nSTAND3
Zeta_toxin
AAA_17
RNA_helicase
AAA_19
NTPase_1
AAA_28
Motif
Other DBs
NCBI-GeneID:
101271333
NCBI-ProteinID:
XP_033277559
LinkDB
All DBs
Position
4:90982223..91065487
Genome browser
AA seq
1145 aa
AA seq
DB search
MDIRKFFGVIPSGKKVVSETAKKNEKTKSAEETRKAKKGIKEIKVNRSCKEDDFKQKQPN
KKKRIIYDSDSESEETVQVKNSKKRPEKLPLSSKPAKIRHQDPVTYISETDEEDDFVCKK
AASKSKENGGSPNSYLGASNMKKNEENTKTLNTKNKPLSPMKLTPTSVLDYFGTASVQRS
AKKMVASKRKEPSQNADDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLALLDEEPK
TKKAQKDPGERETFSSVQASLCKAEKPKYPHKEKFSDDRKNCSPKKQTKCESSKESQQHS
RSSTHKIGETSSPKTSSKLAPLKKKEESSNKETEPMASKRKENAIELKETRTPKKIKSSP
AKKESISPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESI
ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRT
MPGKKSKYEIAAEAEMKKEKSKLERTPQKNDQGKRKISPTKKESESKKCRLTPKKQSSIK
IKKETSMFQRGLDFKEQVTEETNGDSWARNLADDSSENKVENLLWVDKYKPSSLKTIIGQ
QGDQSCANKLLRWLQNWHKSPSEDKKHAAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTA
SLVCQELGYSYVELNASDTRSKNSLKEIVAESLNNTSIKGFYSSGAAHSVGTKHALIMDE
VDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIK
GAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSLRAK
KDIKLGPFDVARKVFVTGEETAHMSLVDKLDLFFYDYSIAPLFVQENYIHVKPVAAGGDM
KKHLMLLSRAADSISDGDLVDRQIRNKQNWSLLPTQAIYASVLPGELMRGYMTQFPTFPS
WLGKHSSMGKHDRIVQDLALHMSLRTYSSKRTVNVDYLSHIRDALVQPLTSQGIEGVQDV
VALMDAYYLMKEDFENIMEISSWGDRPSPFSKLDPKVKAAFTRTYNKEVHLIPYSLQAVK
THRHSTGPALDAEYNEELNEDDSQSDEKDQDTLETDAMIKKKTKSSKTSKSEKESRKGKG
KSSKK
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgaaaattctttggggttataccaagtggaaagaaagttgtaagtgaaaca
gcaaagaagaatgagaaaacgaagtctgctgaagaaaccagaaaagcaaagaaaggaata
aaggaaatcaaggtaaatcgttcttgtaaagaagatgacttcaaacagaagcaaccaaac
aagaaaaagaggatcatctatgattcagattcagaatcagaggagacagtgcaggtaaaa
aactccaaaaagcgaccagaaaaattgccactgtcttctaaacctgctaaaattcgacac
caggatcctgttacatacatttcagaaacagatgaagaagatgactttgtgtgtaagaag
gcagcctctaaatcaaaagagaatggaggatctccaaatagttatcttggagcatcaaac
atgaaaaagaatgaagaaaacactaagacactaaacactaagaataagcctttgtcacca
atgaagcttacccccacatcagtgcttgattattttggaactgcaagtgtccaaagatcg
gctaagaagatggtggcaagcaaaagaaaagagccttcacaaaatgcagatgattccaga
ttaaatgatgaagccatcgccaagcaattgcaacttgatgaagatgcagagctagagaga
caactgcatgaagatgaagagtttgccagaacattagccttgttggatgaagaacccaag
accaaaaaggctcaaaaggacccaggagagagagagacgttttcatctgtgcaagccagt
ttatgtaaagcagaaaaacctaaatatcctcataaagaaaaattttcagatgacagaaag
aactgcagtcctaagaagcaaactaaatgtgaaagttcaaaagaatctcagcaacattcc
aggtcatccactcataaaataggagaaacttcttctccaaaaaccagttccaagctggca
ccactgaaaaaaaaagaagaaagttctaataaagaaacagagcctatggcctcaaaaaga
aaagaaaatgccattgagttgaaagagacaagaactcctaagaaaatcaaaagttctcca
gctaaaaaagagtctataagtcctgaagattctgaaaagagacgaactaattatcaagct
tatcgaagctacttaaatcgagaaggtcccaaagctctgggctccaaagagataccaaag
ggagctgaaaattgcttggaaggccttacgtttgtaatcacaggagtgctggagtccatt
gaacgagatgaggccaagtctctaattgagcgttatgggggaaaagtaacaggaaatgtc
agcaagaaaacaaactaccttgtcatgggtcgtgatagtggtcagtccaagagtgataag
gcagcagccttgggaacaaaaattattgatgaagatggcctattgaatctgattcgaact
atgccaggcaagaagtccaagtatgaaatagcagctgaagctgagatgaagaaagaaaaa
tccaaattggaaagaacaccccaaaaaaatgaccaaggaaaaagaaaaattagtccaact
aagaaggaatcagaatctaaaaagtgcagactgactcccaaaaagcaaagctctataaaa
ataaaaaaggaaacaagtatgtttcagagaggcctggacttcaaggagcaggtgactgag
gaaacaaatggtgacagctgggctaggaatttggctgatgacagcagtgaaaacaaagtg
gagaatttgctctgggtggataaatataagccatcctcgctcaagaccataattggacag
caaggtgaccagagctgtgccaacaaactcctacgctggctccaaaactggcacaagagt
ccatctgaagataaaaaacacgcagcaaagtttggtaaatttgctggcaaagatgatggc
tccagttttaaagctgcattgctctcaggccctcccggtgttggcaaaacaaccacagct
tctctggtttgtcaggaattgggatatagctacgtggaactgaatgcaagtgacactcgg
agtaagaacagtttgaaggagattgttgctgaatcgctgaataataccagcatcaaaggc
ttttattcaagtggagcagcccattcagtaggcacgaaacatgctctcatcatggatgaa
gtagatggcatggccggcaatgaggacaggggaggaattcaggaattaattggcctgata
aaacatacaaaaattcccattatttgtatgtgcaacgatagaaatcatcccaagattcga
tctttggttcattattgttttgatcttcgttttcaaagacctcgggttgaacagattaag
ggtgctatgatgtctattgcatttaaagagggtttaaagatcccccctccagctatgaat
gaaataattttgggagccaatcaagatatcagacaggttttacacaatctgagtatgtgg
tgtgcacgaagtaaagcactaacctatgaccaggctaaggctgattctcttagagccaaa
aaggatatcaaattgggcccatttgatgttgcccggaaagtgtttgtaactggagaggag
actgctcatatgtcacttgtggacaaattagatctctttttttatgattattcaatagca
cccctctttgtccaggagaactacatacatgtgaagcctgtagccgcagggggtgacatg
aaaaagcacttgatgcttttaagcagagcagcagacagcatatctgatggtgacctagtg
gaccgtcagatccggaataagcaaaactggagtcttctgcccacacaggccatttatgcc
agtgttcttcctggagagttaatgagggggtacatgacccagtttcctaccttcccaagt
tggttggggaagcactcatctatgggcaaacacgatcgtattgttcaggacctagcattg
catatgagtctcagaacttactccagcaaaaggactgtaaacgtggattatctgtcccat
ataagggatgcacttgtacagcccttgacctcacaagggatagaaggagtacaggatgtt
gttgctcttatggacgcgtattatttgatgaaagaagactttgagaatatcatggaaatc
agcagctggggagacagacctagtcccttctccaagctggatcccaaggtgaaagcagcc
ttcacaagaacttacaataaggaagtccaccttattccgtattcactccaggcagtaaag
acacacagacacagcacaggcccagcgctggatgctgaatacaatgaagagttaaatgaa
gatgactctcagtctgatgagaaagaccaggacactttggaaactgatgctatgatcaag
aaaaagacaaaatcttcaaagacttcaaaatcagaaaaagagtccagaaaaggaaaagga
aaaagttcaaagaaataa
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integrated database retrieval system
