Orcinus orca (killer whale): 101271923
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Entry
101271923 CDS
T05247
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03030
DNA replication
oor03410
Base excision repair
oor03420
Nucleotide excision repair
oor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101271923 (LIG1)
03410 Base excision repair
101271923 (LIG1)
03420 Nucleotide excision repair
101271923 (LIG1)
03430 Mismatch repair
101271923 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oor03032
]
101271923 (LIG1)
03400 DNA repair and recombination proteins [BR:
oor03400
]
101271923 (LIG1)
Enzymes [BR:
oor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101271923 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
101271923 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101271923 (LIG1)
DNA replication proteins [BR:
oor03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101271923 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101271923 (LIG1)
DNA repair and recombination proteins [BR:
oor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101271923 (LIG1)
NER (nucleotide excision repair)
Other NER factors
101271923 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
101271923 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
101271923
NCBI-ProteinID:
XP_012388930
LinkDB
All DBs
Position
20:complement(51146207..51188207)
Genome browser
AA seq
922 aa
AA seq
DB search
MQRSIMSFFQPKKEGKVKKPEKEISNSTRETESPPKVALKERNRVVPEGDSPVKRPGRKM
ARVLGSEGEDEEEEAPKPPKIQKCAPDSPQVSPPSPGTLPESSPSHSSTSPTVVSPSGIP
KRRTARKQLSKRTFQDVLQEQGKDEDGGTKKKRKKEEEEEEELETPTESLTEPEGGNKKE
AEEGDQPRSPPEPLKTSTKPPTESVSEPKVAVKQGPQEDGQAKPPPKAPKTLSSFFSPRK
PAIKQEAKEEGPSALRKDETKGHLDPSSYNPAKNNYHPVEDACWKVGQRVPYLAVARTFE
KIEEVSARLRMVETLSNLLRSVAALTPADLLPVLYLSLNRLGPPQQGLELGIGDGILLKA
VAQATGRQLESVRAEAAEKGDVGLVAESSRSTQRLMLPPPALTASGVFTKFRDIAQLAGS
ASTAKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFP
PAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGVERLPEHCRLSPG
VPLKPMLAHPTRGVSEVLRRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGR
YPDIISRIHKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCL
YAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKD
SCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGG
FLLAAYDEESEELQAICKLGTGFSDEELEEHHQTLQALVLPAPRSYVRADGAVAPDHWLD
PSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFICVREDKKPEEATTSAQVACLY
RKQSQIQNQQGTEPDSDLEDFY
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtattatgtcatttttccagcccaagaaagagggcaaagtgaagaagcca
gagaaggagatatccaacagcaccagagaaacagagtcccctccaaaggtggcgctgaag
gagcggaatagagtggtacctgagggcgactctccagtgaagaggccagggaggaagatg
gcccgggtcctgggcagtgaaggggaggacgaggaggaggaagcccccaagccccccaaa
atccagaagtgtgctccagattccccacaagtctcccctcccagtcctggcacactgcct
gagagcagcccttcccactctagcacctctcccacggtcgtctccccgtcagggatcccg
aagcgtcgcacggcccggaagcagctttccaaacggacatttcaggatgtcctgcaagag
cagggcaaggacgaggacggaggaaccaagaagaagaggaagaaggaggaggaggaggaa
gaagaattagagacaccgacagaaagcctcacagagcctgaagggggcaacaagaaggaa
gcagaagaaggggaccagcccaggtcaccccctgagcccctgaagacctccacaaagccc
ccaacagaaagcgtttcagagcccaaggtggccgtgaagcagggaccacaggaggacggc
caggctaagcctccccccaaagctcccaagacgctcagcagtttcttctctccccggaag
ccagcgatcaaacaagaagcaaaagaagagggacccagcgctctgagaaaggacgagacc
aagggacacctggacccatccagctacaatcctgccaagaacaactaccatcccgtcgaa
gatgcttgctggaaggtgggccagagagtcccttacctggctgtggcccggacgtttgag
aagatcgaagaggtttctgcacggctccggatggtggagacactgagcaacctcctgcgc
tccgtggcggccctgacacctgctgacctcctccccgtcctctacctcagcctcaaccgc
ctggggccgccccagcagggcctggagctcggcattggcgacggcatcctcctcaaggcg
gtggcccaggccacaggccggcagctcgagtcggtccgggccgaggcggccgagaagggc
gacgtggggctggtggccgagagcagccgcagcacccagaggctcatgctgcccccaccc
gccctcaccgcctccggcgtcttcaccaagttccgggacatcgcgcagctggccggcagc
gcttccacagccaagaagatggatgtcatcaaaggcctctttgtggcctgccgccactca
gaagcacgattcatcgccagagccctgagtggacggctgcgcctcgggctggcagagcag
tcagtgctggcggccctcgcccaggccgtgagcctcaccccgccaggtcaagaattcccc
ccagccgtggtggatgctgggaagggcaagacagcagaggccagaaagacatggctggag
gagcaaggcatgatcctgaagcagacgttctgcgaggtgcccgacctggaccggatcgtc
cccgtgttgctggagcacggtgtggagcggctcccggagcactgcaggctgagcccaggg
gtccccctgaaaccaatgttggcccacccaacgcggggcgtcagcgaggtcctgaggcgc
tttgaggaggcagctttcacctgcgagtacaaatatgatgggcagagggcacagatccac
gttttggaaggcggggaggtgaagatcttcagcaggaatcaggaggacaataccggaagg
taccctgatatcatcagccgcatccacaagattaaactcccatcagtcacatccttcatc
ctggacgcggaagctgtggcttgggaccgggaaaagaagcagatccagccattccaagtg
ctcaccacccgcaaacgcaaggaggtggacgcggcagagatccaggtgcaggtgtgtctg
tacgccttcgacctcatctacctcaatggagagtccctggtacgtgagcccctttcccga
cgccggcagctgctccgggagaacttcgtggagacggagggcgagtttgtctttgccacc
tctctggacaccaaggacacggaccagatcgccgagttcttggagcagtcggtgaaagac
tcctgcgaggggctgatggtgaagaccctggatgtggacgccacctacgagatcgccaag
aggtcgcacaactggctcaagctgaagaaggactacctggatggcgtgggcgacaccctg
gacctcgtggtgatcggcgcctacctgggccggggaaagcgggccggccggtacgggggc
ttcctgctggccgcctacgacgaggagagcgaggaactgcaggccatatgcaagctcgga
acgggcttcagcgacgaggagctagaggagcatcaccagaccctccaggccctggtgctg
cccgccccacgctcctatgtccgggccgacggcgccgtggcccctgaccactggctggac
cccagcgccgtgtgggaggtgaagtgcgcagacctctccctctcccccatctacccggct
gcccggggcctggtggatagcgagaagggaatctccctccgcttccctcggtttatctgc
gtccgtgaggacaagaagccggaggaggccaccaccagtgcccaggtggcctgtctgtac
cggaagcaaagtcagattcagaaccagcaaggcacagagccagactccgacctggaagat
ttctactag
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