Orcinus orca (killer whale): 101272002
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Entry
101272002 CDS
T05247
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X3
KO
K10858
DNA mismatch repair protein PMS2
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03430
Mismatch repair
oor03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101272002 (PMS2)
03460 Fanconi anemia pathway
101272002 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oor03400
]
101272002 (PMS2)
DNA repair and recombination proteins [BR:
oor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
101272002 (PMS2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
UfSP_MPN_N
Motif
Other DBs
NCBI-GeneID:
101272002
NCBI-ProteinID:
XP_004268980
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Position
16:complement(83056911..83083203)
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AA seq
865 aa
AA seq
DB search
MEQAVVPSSELAKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSVDASATNIELRLKD
YGAELIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDV
TISTCHTSAKVGTRLVFDHNGKILQKTPYPRPRGTTVSVQQLFYTLPVRHKEFQRNIKKE
FSKMVQVLHAYCIISAGVRVSCTNQVGQGKRQPVVCTSGGSSMKENIGSVFGQKQLQSLI
PFVQLPPSDTVREEYGLSSSQALQNLFCISGFISHCAHGVGRSSTDRQFFFINRRPCDPA
KVSRLVNEIYHMYNRHQYPFVVLNISVDLECVDINVTPDKRQILLQEEKLLLAVLKTSLI
GMFDNDVNKLNVSQQPLFDVEGHSIKRHSAEVEKPVPEKQDDPAPLRTRGEEKRAVTISR
LREAFSLRHTVENKSRGPKATDPRRISPRQKSSTPLPSASRPLCSWKHISEPREEGVTST
QGPCDPMGRVDTEEGWGHSSTSAGSEEGSSTPKTGSQPSSDHVASSPKDGFSQENVESLE
KLPETDDRLLGTNCHLDHEESGSRARVSLQPTQLSSPNAKRFRKEGVPLNPDVPPESMKT
QNASAPEVDVAVEINKKIVPLDFSMSSLAKRIKQLCQQEQRQEGGQNYRKFRAKICPGEN
QAAEDELRKEISKTMFAEMEIIGQFNLGFIITKLNADIFIVDQHATDEKYNFEMLQQHTV
LQGQRLIAPQTLNLTAVNEAVLIENLEIFRKNGFDFVIDEGAPVTERAKLISLPTSKSWT
FGPQDIDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNTSEMKKLITHMGEM
DHPWNCPHGRPTMRHIANLDIISQN
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagccgtcgtgccgagttcagaacttgctaaggccatcaaacctatcgatcgg
aagtcagtccatcagatttgttctgggcaagtggttcttagtctaagcactgctgtgaag
gagttggtggaaaatagtgtggatgccagtgccactaacattgagctcaggcttaaagac
tatggggcggagctcattgaagtttcagacaatggatgcggggtagaagaagaaaacttt
gaaggcttaactctgaagcatcacacttctaagattcaggagtttgctgacctcactcag
gttgaaacttttggctttcggggggaagctctgagctcactctgtgcactgagtgatgta
actatttctacctgccacacatctgcgaaggttgggactcgactggtgtttgatcacaat
ggaaaaatcctccagaaaaccccctacccacgacccagagggacgacagtcagcgtgcag
cagttattttatacgctacctgtgcgccataaggagtttcaaaggaatattaaaaaggag
ttctccaaaatggtccaggtcttacacgcctactgtatcatttcagcgggcgtccgtgta
agttgcaccaatcaggttggacagggtaagaggcagcctgtggtgtgcaccagtggaggc
tccagcatgaaggaaaatatcggatctgtatttgggcagaaacagttgcaaagcctcatc
ccttttgtgcagctgccccctagtgacactgtccgtgaagaatacgggctgagctcttcc
caggctctgcagaacctgttttgtatctcaggttttatttctcactgtgctcacggcgtg
ggaagaagttcaacggacagacagtttttctttatcaatcggcggccttgtgacccagca
aaggtttccagacttgtgaatgagatctatcacatgtataaccggcatcagtatccattt
gttgttcttaacatttctgttgatttggaatgtgtcgacatcaacgttactccagataaa
aggcaaattttactacaggaggagaagcttttgttggcagttttaaagacgtctttgata
ggaatgttcgataatgatgttaacaagctcaacgtcagtcagcagccgctgtttgacgtc
gaaggtcactcaataaaaaggcattcggcagaggtggagaagcccgtgccagagaagcag
gatgatcccgccccattaaggactcgcggggaagagaaaagggcagtgaccatttccaga
ctgagggaggccttttcccttcgtcacacagtggagaacaagtctcggggtccgaaggcc
accgacccaagacggatttctccacgacagaaaagcagcaccccacttcctagcgcttca
aggcccctctgctcctggaagcacatctctgaacctcgggaggaaggggtgacttccact
caggggccctgtgacccgatgggcagagtggacacggaggagggctgggggcacagcagc
acatctgccggctctgaggaggggtccagcaccccaaagacgggcagccagcccagcagt
gaccatgtggcaagctcccccaaagatgggttttcgcaagaaaatgtggagtctttggag
aagttacctgaaacggacgatcgtcttttgggcacgaattgccacttagaccacgaagaa
agcggctcccgagctagagtttcgctgcagccaactcagctctcatccccaaacgcaaag
cgttttagaaaagaaggggttcctttaaatcccgatgtccctccagagtccatgaaaact
cagaacgcttcagcgccggaggtggatgtagctgttgaaattaacaagaaaatagtgccc
cttgacttttctatgagctctttagccaaacgaataaagcagttatgtcagcaagaacag
cgacaagaaggtggacaaaattataggaagtttcgggcaaagatttgccctggagaaaat
caagcagcagaagatgaactaagaaaagagataagcaaaacgatgtttgcagaaatggaa
atcattggtcagtttaacttgggatttatcatcaccaaactgaacgcagatattttcata
gtggaccagcatgccacggatgagaaatacaacttcgagatgcttcagcagcacactgtt
ctccagggtcaaaggcttatagcacctcagactctcaacttaacagctgtcaatgaagca
gttctaatagaaaatctggaaatattcagaaagaatggctttgactttgttatcgatgaa
ggcgcgccggtcactgaaagagctaaattgatttccttgccaactagtaaaagctggacc
tttggaccccaggacatagatgaactgatcttcatgctgagcgacagccccggtgtcatg
tgccggccttcccgggtcaggcagatgtttgcctccagggcctgtcggaagtctgtgatg
attggaactgctcttaacacaagtgagatgaagaaactcatcacccacatgggggagatg
gaccatccctggaactgtccccacggaaggcccaccatgagacacattgccaatctggac
atcatttctcaaaactga
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