Orcinus orca (killer whale): 101272377
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Entry
101272377 CDS
T05247
Symbol
RGPD4
Name
(RefSeq) ranBP2-like and GRIP domain-containing protein 4 isoform X1
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03013
Nucleocytoplasmic transport
oor03250
Viral life cycle - HIV-1
oor05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101272377 (RGPD4)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101272377 (RGPD4)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
101272377 (RGPD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oor03019
]
101272377 (RGPD4)
03110 Chaperones and folding catalysts [BR:
oor03110
]
101272377 (RGPD4)
04121 Ubiquitin system [BR:
oor04121
]
101272377 (RGPD4)
Messenger RNA biogenesis [BR:
oor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101272377 (RGPD4)
Chaperones and folding catalysts [BR:
oor03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
101272377 (RGPD4)
Ubiquitin system [BR:
oor04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
101272377 (RGPD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
Zn_ribbon_RanBP
IR1-M
Pro_isomerase
WH1
TPR_1
TPR_2
TPR_14
TPR_16
TPR_CcmH_CycH
ARM_TT21_C
TPR_8
ANC1_spectrin
DUF6479
TPR_11
Motif
Other DBs
NCBI-GeneID:
101272377
NCBI-ProteinID:
XP_033257544
LinkDB
All DBs
Position
13:complement(785982..840117)
Genome browser
AA seq
3094 aa
AA seq
DB search
MRRNKADVERYIASVQGSAPSLREKSMKGFYFAKLYYEAKEYDLAKKYISTYINVQERDP
KAHRFLGLLYEVEENIEKAVECYKRSVELNPTQKDLVLKIAELLCKNDVSDGRAKYWVER
AAKLFPGSPAIYKLKEQLLDCKGEDGWNKLFDLIQSELYARPDDVHMNIRLVELYRSNNR
LKDAVAHCHQAERNIVLRSSLEWNSCVVQTLKEYLESSQCLESDKSNWRATNQDLLLAYA
NLMLLTLSTRDVHESRELLESFDSALQSVKSCVGGNDELSATFFEVRGHFYMHAGSLLLK
MGQHSDVQWRALSELAALCYLIAFQVPRPKIKFIKGEAGQNLLEMMACDRLSQSGHMLLN
LSRDKQDFLKEVVESFANESGQSAVYDALFSSQSPKDRSFLGSDDIGNLDVQAPDPEDLA
RYDVGAIRAHNGSLQHLTWLGLQWSSLPALPAIRKWLKQLFHHLPQETSRLETNAPESIC
ILDLEVFLLGVIYTSHLQLKEKCNSHYSFYQPLCLPLPVCKQLCTERQKSWWDAVCNLIH
RKAIPGTSAKLRLLVQHDINTLRGQEKHGLQPALLVHWAKCLQKTGSGLNSFYDQREYIG
RSVHYWKKVLPLLKILKKKSSIPEPIDPLFKHFHSADIQASEMGEYEEEAHITCAILDAV
NGNIDDAVAAFESINNVVSYWNLALIFHRKAEDIENDALSSEEQEECKNYLRKTRDYLIK
ILDDSDSDLSVVKKLPVPLESVKEMLNLVMQELDDFSEGGPLYRNGSLRNADSEIKHSTP
SPTKYSLSPNKSYKYSPKTPPPWAEDQNSLLKMICQQVEAIKKEMQELKLNSGNSGSPHR
WPTENYGPDSVPDGYQGSQNFHGAPLTVATTGHSMYYSQSPAYNSQYLLRPAANVTPTKG
PVYGMNRLPPQQHIYAYSQQMHTPPVQSSSACMFSQEMYGPPLRFESPATGILSPRGDDY
FNYNVQQTSTNPPLPEPGYFTKPPVAAHASRSAESKGMEFGKTNFVQPVPGEGMGPSLAA
PVRTSQPTPFKFNSNFKSNDGDFTFSSPQVVAQPPSTTYTNSESLLGLLTSDKPLQGDSY
GGTKAAQTIGPRNTFNFGSKNVPGISFTENMGPTQQKNSGFRRSDDMFTFHGPGKSVFGT
PAAEPANKSHDTDGGSAHGDEDDDGPHFEPVVPLPDKIEVRTGEEDEEEFFCNRAKLYRF
DAGSREWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMALAPNAGSDRSF
VWYALDYADESPKPEQLAIRFKTPEEAALFKCKFEEAQSMLKASGANRATTSSQSTRTIK
EPTGHDKDIGKSAAGNMNFEFQVAKKEGSWWHCNSCSLKNAATAEKCVSCQNLNPSSKEL
LSSSLVETVSTPKSGSENTPDRFALTTPKKEGHWDCSICLVRNEPTVSRCIACQNTKSAN
KSGSSFVQQPSFKFGQGDLPKSASSDFRSVFSVKEGQWDCSVCLVQNEGSSAKCMACQNP
RKQSFPASAVPAPASFKFGASETSKAPKSGFEGVFAKKEGQWDCSLCLVRNEASAAACVA
CQNPPTSAAPAPASSETSKAPNSGLEGMFTKKEGQWDCSVCLVRNEGSSTKCVACQNPRK
QSLPASAVPAPASFKFGTSETSKAPKSGLEGIFTKKEGQWDCSVCFVRNESSSLKCVACD
VSKPAHKPVAEEPSAFTLGSTTKANDSSGSQVGTGFKSSFSEKAFKFGSAEQGFKFGRVD
QENTPSFTFQSSSNTDSKSTKEGFSFSVPVSADGFKFGIQEPGSQGRKSEKPFGDDAGCQ
AQDAGGQKDGSAVVLGQTGSTFTFADLAKSNSGEGFQFGKKDPNFKGFSGAGEKLFSSQS
SKMADKADTCADLEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLF
RFDAEISQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMHLKPLSGSDR
AWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLDIPLQTPHKLVDTGRA
AKLIQRAEEMKSGLKDFKTFLTNDQAKVTDEESKSSGAGAASAAAVSGMPSPEAAGPTLE
WDSYDLREDALDDSVSSSSVHASPLASSPVRKNLFRFGESTTGFNFSFKSALSPSKSPAK
LNQSGASVGTDEDSDVTQEEERDGQHFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYD
KDAGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMALQNMKGTERVWV
WTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKLAQEKDFLITPHVSRSTTPRESP
CGKVAVAVLEETTRERTDSAQGDDVAGATSEVGGVSGTPETTTKAVVSPPKFVFGSESVK
SIFSSEKSKPFAFGNSSATGSLFGFSFNAPLKNNSSEASSAAQSGSEKRAEPGGHQESQS
SDLTPSSDSKVKNPSPAFPKEQSSTSHTFKTPEKVEEKKKPEDLPSDDDVLIVYELTPTP
EQKALASKLQLPPTFFCYKNRPDYVSEEEEDDEDFDTAVKKLNGKLYLDDSEKRRPLEEN
LTDNEKECIIVWEKKPTVEEKAKADTLKLPPTFFCGVCSDTDEDNGSGEDFQSELHKVQE
AQKSQNEGITSTADSVCTDGSKVTLPFLCKSEEPEFTTKCISSPPISSEAVDKPVDLCTR
KENDADSTSQVESKTVSFGFGSSTGLSFADLASSNSGDFAFGSKDKNFQWANTGAAVFGA
QSTSKVGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDREA
SQWKERGVGDMKILWHTMKNYYRVLMRRDQVLKVCANHVITKTMELKPLNVSNNALVWTA
SDYADGEAKVEQLAVRFKTKEMADGFKKKFEECQQNLLKPQEEQVSPRAKETNPVVFFDV
CADDEPLGRITMELFSNIVPQTAENFRALCTGEKGFGFKNSIFHRVIPNFVCQGGDITKH
DGTGGRSIYGDKFEDENFDVKHTSPGLLSMANRGQDTNNSQFFITLKKAEHLDFKHVVFG
FVKDGMDTVKKIESFGSPEGSVSRRIVITECGQI
NT seq
9285 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcaacaaggccgacgtggagcggtatatcgcctcggtgcagggctccgccccg
tctctccgggagaagtcaatgaaaggattctattttgcaaagctgtattacgaagctaaa
gaatatgatcttgctaaaaaatatatatctacatacattaacgtacaagaaagggatccc
aaagctcacagatttctcggccttctttatgaagtggaggaaaacatagagaaagcagtt
gaatgttacaagcgttcagtggaattaaacccaacacaaaaagatcttgtgttgaagatt
gcagaattgctctgtaaaaatgatgttagtgatggaagagctaaatactgggttgaaaga
gcagctaaactttttccaggaagtcctgcaatttataaactaaaggaacagcttttagat
tgtaaaggtgaagatggatggaataaacttttcgacttgattcagtcagaactttatgca
agacctgatgatgtgcacatgaacatccgactagtagagctgtatcgctcaaacaataga
ctgaaggatgctgtggcccactgccaccaggcagagagaaacatagtcttgcgttcaagt
ttagagtggaattcctgtgttgtacagacccttaaggaatatctggaatcttcacagtgt
ttggagtctgataaaagtaactggcgagcaaccaatcaggacttacttctagcctatgct
aaccttatgcttctcacactgtccacgagagatgtgcacgagagcagggaattgttggag
agttttgatagtgctcttcagtctgtgaaatcttgtgtgggtggaaatgatgaactctca
gctactttcttcgaagtgagaggacatttctacatgcatgctggttctctgcttttgaag
atgggtcagcatagtgacgtgcagtggcgagcgctctctgagctggctgcgttgtgctat
ctcatagcctttcaggttccaagaccaaagattaaatttataaaaggagaagctggacaa
aatctactggaaatgatggcctgtgatcgtctgagccaatcagggcatatgctgctaaac
ttaagtcgtgacaagcaagactttttaaaagaggttgtagaatcctttgccaatgaaagt
gggcagtctgctgtatatgatgctctgttttctagtcagtcacctaaggatagatctttc
cttggtagcgatgatattggaaaccttgatgtacaagcaccagatcctgaggatttggct
cgatatgatgttggtgccattcgagcacataatggtagtcttcagcacctcacctggctt
ggcttacagtggagttcattgcctgccttacctgcgattcgaaaatggctaaaacagctt
tttcatcatttgccccaggaaacctcaagacttgaaacaaatgcacctgaatcaatatgt
attttagatcttgaagtatttctacttggagtaatatataccagccacttacaattaaag
gagaagtgtaattctcactacagcttctatcagcctctgtgcttgccacttcctgtgtgt
aaacagctttgcacagaaagacagaaatcttggtgggatgcagtttgtaatctaatccac
agaaaagcaatacctggaacctcagcaaaattgcgacttctagttcagcatgacataaac
actctaaggggccaggaaaaacatggccttcagcctgctctacttgtgcactgggcaaag
tgccttcagaaaacgggcagtggtcttaattctttttacgatcaacgagaatacataggc
agaagtgttcattactggaagaaggttttgccattgttgaagatacttaaaaagaagagc
agtatccctgaacctattgaccctctgtttaaacattttcatagtgcagacattcaggca
tctgaaatgggtgaatatgaagaggaagcacacataacatgtgctatattggatgcagtt
aatggaaatatagacgatgctgtggctgcttttgaatctattaataatgtcgtttcttat
tggaatcttgcattgatttttcacagaaaagcagaagacattgaaaatgatgcactttct
tctgaagaacaagaagaatgcaaaaattacctgagaaagaccagagactacctgataaag
attttagatgacagtgattcagatctctcagtggttaagaaattgcccgtgcccctggaa
tctgtaaaagagatgcttaatttagtcatgcaggagctcgatgacttcagtgaaggaggg
cctctttatagaaatggttctttgcgaaatgcagattcagaaataaaacattctacaccg
tctcccaccaaatactctctatcaccaaataaaagttacaagtattctcccaaaacacca
cctccatgggcagaagatcaaaattctttattgaaaatgatctgccaacaagtagaggcc
attaagaaagaaatgcaggagttgaaactaaatagcggtaactcagggtcccctcatcgt
tggcctacagagaattatggaccagattcagtgcctgatggatatcaggggtcacagaat
tttcatggggccccactaacagttgcaactactggccattcaatgtattatagtcagtca
ccagcatataattcccagtatctactcagaccagcagctaatgttactcccacaaaggga
ccagtttatggcatgaataggcttccacctcagcagcatatctacgcctactcacagcag
atgcacacaccaccagtgcagagttcgtctgcttgtatgttctctcaagagatgtatggt
cccccattgcgttttgagtctcctgcaacaggaattctatcacctaggggtgatgattac
tttaattacaatgttcaacagacaagcacaaatccacctttaccagaaccaggttatttt
acaaaacctccagttgcagctcatgcttcaagatctgcagaatctaagggtatggaattt
ggaaaaaccaattttgtccagcctgtgccaggtgaaggcatggggccatctttggcagca
cctgtgcgtacatcacagccaactccttttaaatttaattcaaatttcaaatcaaatgat
ggcgacttcacattttcctcaccacaggttgtggcacagcccccttctacgacttacact
aatagtgaaagccttttaggtctcctgacttcagacaaaccattgcaaggagatagctac
ggtggaacaaaagctgctcagaccattggacctcgaaatacattcaattttggaagcaaa
aatgtgcctggaatttcatttactgaaaacatgggcccaactcagcaaaagaattctggt
tttcgacgcagtgatgatatgtttactttccacggtccagggaaatcagtgtttggaacg
cctgctgcagagccggccaacaagagtcatgatactgatgggggtagtgcgcacggggac
gaggacgacgacggccctcactttgagccggtggtgcctcttcccgataagattgaagtg
agaactggtgaggaggacgaggaagagttcttctgcaatcgtgccaagttgtatcgtttt
gatgcgggatcaagagaatggaaggagcgtggaattggcaacgtaaagatactaaggcac
aaaacctccggtaaaatccgcctactgatgagacgtgagcaagtgttgaaaatctgtgcg
aatcactacatcagcccagacatggccctggcgcccaacgccggctcggacaggtccttt
gtgtggtacgctctggactatgcagacgagtcacccaaaccagaacagcttgctattaga
ttcaagacacccgaggaggcagcactttttaagtgcaagtttgaagaggcccagagcatg
ttaaaagcctcaggagcaaacagagccacaacttccagtcagtctacgagaactataaaa
gaacccacgggtcatgacaaggatattggcaaatctgctgccggaaacatgaactttgaa
tttcaggttgcaaagaaagaagggtcttggtggcattgtaacagctgctcattaaagaat
gccgcaactgctgagaaatgtgtatcctgccaaaatctaaacccaagcagtaaagagctc
cttagctcatcattagttgaaactgtttccactcctaaatctggctcagaaaatactcca
gatagatttgcattgactactccaaagaaagaaggtcactgggattgtagtatttgttta
gtaagaaatgaacccactgtatctagatgcattgcatgtcagaatacaaagtctgctaac
aaaagtggatcttcatttgttcagcagccttcctttaaatttggccagggagatcttcct
aaatctgccagcagtgatttcagatctgttttttcagtaaaggaaggacagtgggattgc
agtgtttgcttagtacaaaatgaaggaagttctgcaaaatgtatggcttgtcagaatcca
agaaaacagagttttcctgcttctgctgtcccagcacctgcctcttttaagtttggtgct
tcagagacaagcaaggctccaaagagtggatttgaaggagttttcgccaagaaggaagga
cagtgggattgcagtctgtgcttagtgcgaaatgaggcaagtgcagcagcgtgtgtggct
tgtcagaatccacccacttctgctgctccagcacctgcgtcttcagagacaagcaaggct
ccaaacagtggacttgaagggatgttcaccaagaaggaaggacagtgggattgcagcgtt
tgtttggtacgaaatgaaggaagttctacaaaatgtgtggcttgtcagaatccaagaaaa
cagagtttacctgcttctgctgtcccagcacctgcctctttcaagtttggcacctcagag
acaagcaaggctccaaagagtggtctagaagggatattcaccaagaaggaaggacagtgg
gattgcagcgtttgctttgtgcgaaatgagagttcttccttaaaatgtgtggcttgtgat
gtctctaaaccagcccataaacctgttgcagaagaaccttcagctttcactttgggctca
acaactaaggcaaatgactcttctggaagtcaggtgggaacaggatttaaaagtagcttt
tcagaaaaagcctttaagtttggcagtgcagaacaaggatttaaatttgggcgtgtggat
caagaaaatacaccttcatttacatttcagagttcttctaatacagactctaagtcaaca
aaagaaggatttagtttttctgttcctgtgtctgctgacgggtttaaatttggcattcag
gagccgggaagtcaggggaggaagagtgaaaagccctttggagatgacgctggatgtcag
gctcaggatgctggcggtcagaaagacgggagtgctgtggttcttggtcaaactggcagc
acttttacctttgcagatcttgcaaaatcaaattcaggagaagggtttcagtttggcaaa
aaagaccccaatttcaagggcttttcgggtgctggagagaagttattctcctcacaaagt
agtaaaatggctgataaagccgacacttgtgctgaccttgagaaagatgatgacgcctat
aagactgaggacagtgacgatatccattttgaaccagtcgtccagatgcctgagaaagtg
gagcttgtcacaggagaagaagatgagaaagttctttactcacagcgggtaaaattgttt
aggtttgatgctgagataagtcagtggaaagaaaggggtttggggaacttaaaaattctc
aaaaatgaagttaacggtaaactgagaatgctgatgcggagagagcaggtgctgaaggtg
tgtgccaaccactggatcaccaccaccatgcacctgaagcccctctccgggtcggacagg
gcctggatgtggttggctagtgatttttctgatggcgatgccaaactagagcagctggca
gcaaaattcaaaacacccgagctggctgaagaattcaaacagaaatttgaggaatgccag
cgacttctgttagatattccactgcagactccccataagcttgtggatactggcagagct
gccaagctaatccagagggcggaagagatgaagagcggattaaaagatttcaagacgttt
ttgacaaatgatcaagcaaaagtcactgacgaagagagtaagagctcaggagcaggagct
gccagtgctgcggccgtgagtggcatgccaagtcctgaggccgccgggcccaccctcgag
tgggacagctatgacctaagggaagacgctctggacgacagcgtgagtagcagctcagtg
cacgcctccccgctggccagcagccccgtgaggaaaaatctcttccgcttcggtgagtca
accaccgggtttaacttcagttttaaatctgctttgagcccgtctaagtctcctgccaag
ttaaatcagagtggggcctcagtgggcacggatgaagactctgatgtcactcaggaggag
gagagagatggacagcacttcgaacctgtcgtccctttgcctgatctagtcgaggtgtcc
agtggtgaggaaaatgaacaagttgtttttagtcacagagccaaactctataggtatgat
aaagatgctgggcagtggaaagaaagaggcattggcgacataaagattttacagaattat
gataataagcaagttcgcatagtgatgagaagggaccaggtattaaagctttgtgccaac
cacagaataactccagacatggctttgcaaaatatgaaagggacagaaagagtgtgggtg
tggaccgcatgtgattttgcagacggagaaagaaaagtagagcatttagctgtccgtttt
aaactacaggatgttgcagactcgtttaagaaaatatttgatgaagcaaaactagcccaa
gaaaaagattttttgataacacctcatgtttctcgttcgactactcccagagagtcacca
tgcggcaaagtcgccgtagctgtgctagaggaaaccaccagagaacggacggattcggca
cagggtgatgatgtggcaggtgcaacctcagaagttggcggggtgtctggcacacctgaa
acaacaacaaaagcagtggtttcacctccaaagtttgtatttggttctgagtctgttaaa
agcatttttagcagtgaaaagtcaaaaccatttgcatttggcaacagttcagctaccggg
tctttgtttggatttagttttaatgcacctttgaaaaataacagtagtgaggccagttca
gcagcccagagtggatctgaaaaaagagcggagcctggtggtcaccaagagtcgcagagc
tctgatctcacaccgtcttccgacagcaaagtcaaaaacccctctcctgcttttccaaag
gagcagtcctcaaccagtcacacgtttaaaacaccagaaaaggtggaagagaagaaaaag
cctgaagatcttccctcagatgatgatgttctcattgtgtatgagctgaccccgacccct
gagcaaaaagctcttgcaagcaaacttcagcttcctcccactttcttctgttacaagaac
aggccagactacgtcagcgaagaggaggaggatgatgaagatttcgacacagctgtcaag
aagcttaatggaaaactgtatttggatgactcagaaaaacgtagaccgttagaagaaaat
ctaacagataatgagaaagaatgtattattgtttgggaaaagaaaccaacagttgaagaa
aaggcaaaagcagatacgttaaagcttccacctacatttttttgtggagtctgcagtgac
actgatgaggacaatggaagtggggaagactttcaatcggagcttcacaaagttcaggaa
gctcaaaaatcccagaatgagggcataactagcacggctgacagtgtgtgtacggatggc
agtaaagtgactctaccatttttgtgtaaatctgaagaaccagagtttactaccaaatgt
attagttcaccacctatttcttctgaagctgttgataaacctgtggatttatgtactaga
aaggaaaatgatgcagattctacaagccaagtggaaagcaaaacagtttcatttggattt
ggaagtagcacagggctgtcatttgcagacttggcttccagtaattctggggattttgct
tttgggtccaaagataaaaatttccagtgggcaaacactggagcagctgtgttcggagca
cagtcaaccagtaaagttggcgaagatgaagatggtagtgatgaagaggtagttcataat
gaagatatccattttgaaccaatagtgtcattaccagaggtagaagtaaaatctggagaa
gaagatgaagaaattttatttaaagagagagccaaactttacaggtgggatcgagaggcc
agtcagtggaaggagcgtggggttggagacatgaagatcctctggcacacgatgaagaat
tactaccgggtcctgatgagaagagaccaggtgctcaaagtgtgtgcaaaccacgtcatc
accaaaacaatggaactgaaacccttgaatgtttccaacaatgctttagtttggactgcc
tcagattatgctgatggagaagccaaagtggaacagcttgcagtgagatttaaaactaaa
gaaatggctgatggttttaagaaaaaatttgaagaatgtcaacagaatttattgaaaccc
caggaagaacaggtatcaccgagagcaaaggagacaaatcctgtggtgttttttgatgtt
tgcgcagatgatgagcctctgggacgtataaccatggaattattttcaaacattgttcct
caaactgctgagaacttcagagcactgtgcactggagagaagggctttggtttcaagaac
tccatttttcacagagtgattccaaattttgtttgccaagggggagatatcaccaaacac
gatggaacaggaggacggtccatttatggagataaatttgaagatgaaaattttgatgtg
aaacataccagtcctggcttactatccatggccaatcgaggccaggataccaataattct
caatttttcataacactgaaaaaagcagagcatttggactttaagcatgtagtatttggg
tttgttaaagatggcatggatactgtgaaaaagattgaatcctttggttctcctgaaggg
tctgttagtcgaagaattgttatcacagaatgtggacagatataa
DBGET
integrated database retrieval system
