Orcinus orca (killer whale): 101272535
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Entry
101272535 CDS
T05247
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X2
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101272535 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oor03032
]
101272535 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
oor03400
]
101272535 (TOPBP1)
DNA replication proteins [BR:
oor03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
101272535 (TOPBP1)
DNA repair and recombination proteins [BR:
oor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
101272535 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
101272535
NCBI-ProteinID:
XP_004278968
LinkDB
All DBs
Position
5:34939825..35017116
Genome browser
AA seq
1520 aa
AA seq
DB search
MSHNDKEPLFVKFLKSSDNSECFFKALESMKEFQSEEYLQIITEEEALKMKENDRSLYIC
DPFSGKVFDHLKKLGCRIVGPQVVIFCMHHQRCVPRAEHPVYNMVMSDVTISCTSLENDK
REEVHKYVQMMGGRIYRDLNISVTHLIAGEVGSKKYLVAANLKKPILLPSWVKTLWEKSQ
EKKIVRYTDIDMEDFKCPIFLGCIICVTGLRGLDRKAVQQLTVKHGGQYMGQLKMNECTH
LIVQEPKGQKYECARRWNVHCVTVQWFFDSVEKGFCQDESIYKTEPRPEAKTMPDTSTPT
GQINTTNSYALSDVSHISNISASCINESICSSVLNSKVEPTLENLDVSAFQAPEDLLDGC
RIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWDKSAHRPHVV
GAKWLLECFSKGNMLPEEPYIHANYQPMEIPVSDQPESKTTLLKRKKSSFSKKDFAPNEK
HEETDEDLLSQYATNNPTIVEVAQSEVGPFNDSAHVEPLIDSTHISLQEENQSSVSHCLP
DASTITEEGLFSQKSFLILGFSNENEFNIATIIRENAGKIVSLQSRVVADYAVVPLLGCE
VQATVGEVVTNTWLVTCIDYQTLTDPKSNPLFTPVPVMAGMTPLEDCVLSFSQCAGAEKD
SLTFLANRLGASVQEFFVRKSNAKKGMFASTHLVLKEPGGSKYEAAKKWNLPAVTIAWLL
ETARLGKRANESHFLIKNSPKEEQSLETETTNGVNLNPDTPEHPVTDLETHRKTAVTPLD
MNRFQSKAFHAVISQHSGQASVSPAAGQPLQKEPSLCLDTPSKFLSKDKLFKPSFDVKDA
LAALETPGGPSQQKRKLSTPLSEVIVRNLKLALANSSRNTVALSASPQLKDAQSEKEEAP
KPLHKVVVCVSKKLSKKQSELNGIAASLGADYRWSFDETVTHFIYQGRPNDTNREYKSVK
ERGIHIVSEHWLLECAQEYKHLPESLYPHTYNPKMSLDISAVQDGRLCNNRLLSADLTTK
DDEPDHLPVEENDIDSMTTSNKEPATSNGNGRNDSKGALTQTLEMRENFQKQLQEIMSAT
SLVKPQGQRTSLSRSGCNSASSTPDSARSARSGRSRVLEALRQSRQTVPDVNTEPSQNEQ
IIWDDPTAREERARLASNLQWPSCPTQYSELQADVKKLEDSPFQEPLHDSEIAEQAVCDP
ENICVTEAPKHPISEELETPIKDSHLIPTPQAPSIAFPLANPPVAPHPREKIITIEETHE
DLKKQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPNCTHIVVGHPLRNEKYLASV
AAGKWVLHRSYLEACRTAGRFMLEEDYEWGSSSILDVLTGISVQQRKLALAAMRWRKKIQ
QRQESGIIEGAFSGWKVILHVDQSREAGFKRLLQSGGAKVLPGHSVSLFKEATHLFSDFN
KLKPDDLGVNIAEAAAQNVYCLKTEYIADFLMQESPPQVENYCLPEAISFLQNNKEPGPG
FSQKRKAPTEKNKIKRPRVQ
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacaatgacaaagaaccgctttttgtgaagtttttaaagtcttcagacaattct
gaatgtttttttaaagctcttgagtcaatgaaagagttccaatcagaagaatatcttcag
attattacagaagaagaggcattgaaaatgaaggagaatgatagatcactttatatctgt
gacccttttagtggcaaagtctttgatcatctcaaaaagcttggctgcagaattgttggt
cctcaagtagtcatattttgtatgcaccatcaacgatgtgtcccaagagctgaacatcca
gtttataacatggttatgtctgatgtaaccatatcttgtacaagcctggaaaatgataaa
agggaagaagttcataaatatgtacaaatgatgggtggacgcatatacagagaccttaac
atatcagtaactcaccttattgcaggagaagttggtagcaaaaagtatttagttgctgca
aacctgaagaaacctattttacttccttcttgggtaaaaacactttgggagaagtcacaa
gagaaaaaaatagttagatataccgatatagacatggaagacttcaagtgtcctattttt
cttggttgcataatctgtgtcactggcttacgtggcttagacaggaaagcagttcagcaa
ctcacagttaagcatggaggtcaatatatgggacagttgaaaatgaatgagtgtacacac
ctcattgtgcaagaaccaaaaggtcaaaaatatgaatgtgccaggagatggaatgtacac
tgtgtgactgtgcagtggttttttgacagtgttgagaaaggtttttgtcaggatgaatcc
atatataagacagagcctagaccagaagcaaagactatgcctgatacttcaactcctact
ggccagatcaacacaactaatagttatgctctttcagatgtcagccatatttccaacatc
agtgcaagttgcataaatgaatcgatatgtagttcagttcttaatagcaaagtggagcct
acacttgaaaatctggatgtcagtgcatttcaggcacctgaagatttattagatggttgt
cggatctatctttgcggttttagtggcagaaagctagataaactgagaagacttattaac
agtggaggtggagttcgctttaatcagctcaatgaagatgtaactcatgttattgtggga
gattatgatgatgaattgaagcagttttgggataaatcagcccacaggcctcatgtagtg
ggagcaaaatggttgctagagtgttttagtaaaggtaatatgcttcctgaagagccatat
atccatgctaactaccagcccatggaaattccagtttcagaccaacctgaaagtaaaaca
acccttttaaaaaggaagaagagcagcttctctaagaaagactttgctccaaatgaaaag
catgaggaaactgatgaagatctgctctctcaatatgcgactaataacccaaccatagtt
gaagttgcgcagtctgaagttggaccctttaatgattctgctcatgtggagccccttatt
gattctactcatatttctctgcaagaagaaaaccagtcttccgtcagtcattgcctccct
gatgcttctacaattactgaagaaggtttatttagccaaaagagttttcttattttaggt
tttagtaatgaaaatgaatttaatattgcaactatcataagagaaaatgctggaaaaatt
gtgtcacttcagagcagagttgttgctgattatgctgtggttcctctgctggggtgtgaa
gtacaggcaactgtgggagaagttgttacaaatacatggctggtaacttgtatagactat
cagactttaactgatccaaagtcaaatcctctcttcacaccagtcccagtaatggcagga
atgactcctttagaggattgtgttctttcattcagccagtgtgcaggagctgaaaaagat
tcgttgacattcttagcaaatcgccttggagcaagtgttcaagaattcttcgttcgcaaa
tccaatgcaaagaaaggcatgtttgccagtacacatcttgtattgaaagaaccaggtggt
tctaaatatgaagctgccaagaagtggaatttaccagcggtcactatagcttggctgttg
gagactgctagattgggaaagagagcaaatgaaagccattttctgatcaaaaattcacct
aaagaagaacaaagtctggaaactgagacaacaaacggggtgaatctaaatccagatact
ccagagcatcctgtcacagacctggaaactcacagaaaaacagccgttacacctttagat
atgaaccgctttcagagtaaagctttccatgcagtgatctcacagcactccggacaggct
tcagtctcccctgcagcaggacaaccacttcagaaggagccctcattatgcctggataca
ccatcaaagtttctgtccaaggacaaactcttcaagccttcctttgatgtgaaggatgca
cttgcagccttggaaactccaggaggtcccagccagcagaaaaggaaactgagtacacca
ctctcagaagtcattgtcagaaacttgaaacttgctttggcaaatagctctcgaaatact
gtcgctctttctgccagccctcaactgaaagatgcccagtcagaaaaggaagaagctcca
aagccacttcacaaggtagtggtatgtgttagtaaaaaactcagtaagaagcagagtgaa
ctaaatgggattgcagcctctctaggtgcagactacaggtggagttttgatgagacagtg
actcatttcatttatcaagggagaccaaatgacactaatcgggagtataaatctgtaaaa
gagagaggaatacacattgtttcagagcactggcttttagaatgtgcccaagagtataaa
catcttcctgaatctctttatccacatacttataatcccaaaatgagcttggatatcagt
gcagtgcaagatggcagactttgtaataaccgactactctcagctgatttgacaacgaag
gatgatgagccagatcatttgcctgtagaagaaaatgatatagacagtatgactaccagt
aataaagaaccagcaacatcaaatggaaatggcaggaatgactctaaaggagctctgaca
cagaccttggagatgagagagaactttcaaaagcagctgcaggagataatgtctgcaact
tcactagtgaaaccccaagggcagaggacttccctttcaagaagtggttgtaacagtgcc
tcttcaacccctgacagcgctcgctctgcccgcagcggacgaagtagagtcctagaggca
ctgaggcaatctcgtcaaacagtacctgatgtcaacacagagccctcccaaaatgaacag
atcatttgggatgaccctacagccagggaagagagagcaagacttgccagcaatttgcag
tggcctagttgtcccacacaatactctgagcttcaggctgatgttaaaaaattggaggat
tctcctttccaggagcctttacatgattcagaaattgctgaacaggctgtctgtgatcct
gagaacatatgtgtgactgaagccccaaaacacccgatctctgaagaactggaaactcca
ataaaagacagccacctgatccctacgcctcaagcccccagtattgccttccccctagcc
aacccacctgtggctccacaccctagagaaaagattataacgatagaggagactcatgaa
gacttaaaaaaacagtacatatttcagttgtcatctctgaatcctcaagaacgtattgat
tattgtcatctgattgaaaaactaggtggattagtgattgagaagcagtgctttgatccc
aactgtacacacattgttgtgggacatccacttcgaaacgagaagtatttagcttcagtg
gcagctgggaagtgggtgctccatcgctcctaccttgaagcttgcaggactgctgggcgc
ttcatgctggaagaagactatgaatggggaagtagttccatacttgatgttttgactgga
atcagtgtacagcaacgaaaactagcacttgcagcgatgagatggaggaagaaaatccag
caaagacaagaatcaggcattattgagggggcatttagtgggtggaaggttattttacat
gtcgatcagtcccgagaagcaggattcaaacgccttcttcagtcaggaggagcaaaggtg
ctacctggtcattctgtatctttatttaaagaagctacacatctcttttctgactttaat
aaactaaaaccagatgacttgggagttaatatagcagaagctgctgcccagaatgtgtac
tgcttgaaaacggaatacattgctgattttcttatgcaggaatctcctcctcaagtagaa
aattactgtctaccagaagctatttcatttcttcagaataataaggaacctgggcctgga
ttctcacaaaagaggaaagctcctacagagaaaaataaaatcaaacgacctagagtacag
taa
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integrated database retrieval system
