Orcinus orca (killer whale): 101273005
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Entry
101273005 CDS
T05247
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
oor
Orcinus orca (killer whale)
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oor03036
]
101273005 (SHOC1)
Chromosome and associated proteins [BR:
oor03036
]
Eukaryotic type
Meiosis-specific proteins
Others
101273005 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
101273005
NCBI-ProteinID:
XP_004269384
LinkDB
All DBs
Position
6:complement(98935198..99023896)
Genome browser
AA seq
1509 aa
AA seq
DB search
MFPAFKYCAIDYSYENVVRKKFCRDALLLRIPSCLYQDENYPARITDNKFRKPWTRVSAV
SVSEMTEISLLDQWKASLFVEEFPAKKTVTGMMTELSCEFEEIVPSSNPDSQTEVEEASL
YNHKDYNEFFTLVNCLEECPLLQAQKQDLYIDDEEIIFVNNLMTYRSQLPTSHTLLSRLK
LFLVKDPLLDFKGQMFTEADFFRECFSFQGDMKGFVEDFYMDKENFCQEKLEDTVGLNEA
ASILPECEFLISASLKQEVDIPSLSELKESLNLMPEMINYVDENEKLFRRDLTIKHGIYI
EDIKCSSTEILAIQSQCESEYKEPVELEMPVTHLHLTNQHSSVNSLCAELQKFPSSPACK
ISLLIAEESANKYCMVWQSESCRSSLNPFLFRVPRTGEPNSLYSVVDFKKISSIEEESLV
VNPENAEWWKQAGLNLIMTETLEHLSTYLYHNLSSDDSKLETFLPTNVLQLKSWLEHKSC
SSPIKLIEISTNDHLSPSQKTPPLSKAVTDSYFSDEYVAVERPRKEEKPKIDLELGYRII
RTKENEDYLELDSTVPSTESSSSSKIEEASFKHGKKQENNLDLLNDFIMLRNKYKTCTSK
TEVTDDGKDELQDKEEHSLTLQEENPIVCTNETLEKANQERRADNVIEIQASDSQCQAYC
LLEAAASPILKKLVCLCTLPAANWKFDTVIFDQTRFLLKQQEKVISDAIHQGKNVEREMT
FKYAALLHLLVTIRDVLLTCSLDTALGYLSNAKDIYKSILGSYLDDIWRQLEIVQFIREK
KPETSYKIQELQCQILNWMQSGQQIKVLIIIRMDSDGEKHLLIKILNEIEGLTLTVLRSN
KKDFLESKGVLNGTSFCAVVHNQYIGADFPWSNFSFVVEYNFVENSCWAEHCEKLNIPYL
AFKVILPDTVLKRSTLLDSFGGFLLEIQIPYVFFASEGLLNTPEILQLLETKYNITLVER
CCSESLKLFGGTEHYVVVTIDEDTTIILQDLEELNCEKASDNIIMRLMALSFQYSYCWII
LYAKKPLNSEYYLTEKTLHHLALIYAALVSSGLKSEELDVKLLIAPGVEETALLIRQIAD
HNLMTSKRDPHEWLDKSWLEISPSKEEMYLLDFPSVNPLVAQLMLNKGPSLNWILLATLC
QLQELLPEVPEKVLKHFCDITSLFKISPSVTKSPQISSPQENRNQTSAFTSQTSASGSSD
SVIQEHNEYYQYSDLGETVHEDTNATSNYNSSLMKLKEMPCILPPVTSYNQTSYWKVSSC
NPNIMQNNSFLTNIEARNVSGSSFLNQNDSESDVFSLGLTAMNCETMISPIDTQKRVTPN
FINYQKKETHEAKGPTNKELSAPVFSLESSQSPLHWNFKRNVWQQQNHSFNLQYGAEQNT
CDKWSSQKDNLFTNQQKCLSDELEGLICESSNAETKKTFWKELPSVPSLDLFCASDSNVS
QKEFNSLYFYQRAGKCLGQKRHSVSSSNSGDKKSLTDFTCSQLPPFKKRRLVYEKVPGRR
DGQTRLRFF
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atgtttccagcattcaaatattgcgcaatagactattcatatgagaatgtagttagaaag
aagttttgcagagatgctttattgcttcgaatcccttcatgtttatatcaagatgaaaat
tatcctgcaagaattactgataataaatttaggaagccatggacaagagtttcagctgtt
tcagttagtgaaatgacagaaatctcactcttggatcaatggaaagcaagtctctttgtg
gaggagttccctgcgaagaaaacagttacaggaatgatgaccgagcttagctgtgaattt
gaggaaattgttccaagttcaaacccagactcccaaactgaagtagaagaagccagctta
tataaccataaggactacaatgaattctttacacttgtcaactgcttagaagaatgtcca
ttacttcaagcacagaagcaagatttgtatattgatgatgaagaaataatttttgtaaat
aatttgatgacctatagaagtcagctaccaacttcgcatactctgttgagtaggctaaaa
ctatttttggtaaaggatcccctgttggatttcaaaggacagatgttcacagaagctgat
tttttcagggagtgtttctcttttcaaggagatatgaaaggttttgtggaagatttttac
atggataaagagaacttttgtcaggagaagctagaagatacagtaggtttaaatgaagct
gcatcaattttgcctgagtgtgaattcttaatatctgcaagcctcaaacaagaagttgat
attccatcactctcagaactgaaggagtcattaaacttaatgccagaaatgataaattat
gtagatgaaaatgaaaagcttttcagaagagatcttactatcaagcatggaatttacatt
gaggatataaaatgcagctccacagaaattttggccattcaaagtcaatgtgaatcagag
tacaaggaaccagtagagttagaaatgccagtaactcatctacacctaacaaaccaacat
tcttcagtgaattcattatgtgcagaacttcagaaatttccatcttctcctgcttgtaaa
attagtttgcttattgctgaagaatcagctaacaaatactgtatggtgtggcaatcagaa
agctgcagaagctctttgaatccatttttgtttagagtgccaagaactggagagcccaac
agtctatattcagttgtagattttaaaaagatatcttctattgaagaagaaagccttgtg
gttaatcctgaaaatgcagagtggtggaaacaagcaggactaaatctgataatgacagaa
actttggaacatctaagtacatatctgtatcataatctatcttctgatgatagtaaactg
gagacatttttgcctaccaatgtgcttcaattaaaatcatggctagaacataaaagttgt
tcctcacctattaaacttattgagatatctacaaacgatcatttatcaccttcacaaaag
actccacctctgtcaaaagcagtaacagactcgtatttttctgatgaatatgttgctgtt
gaaagaccacgaaaagaagaaaagccaaagattgacctagaactaggttatagaataatc
cgaactaaagaaaatgaagattacttggaacttgacagcacagtaccatctactgaatca
tcttcctcttccaaaattgaagaagcatcttttaaacatggtaaaaaacaggagaataat
ttggaccttttgaatgactttattatgctgcgaaataagtataagacttgcacctcaaag
actgaagtcacagacgatggaaaagacgaacttcaagacaaagaagaacattctttaact
cttcaagaagaaaatcctattgtttgtactaatgaaacactagagaaagcaaatcaggaa
aggagagcagataatgtcattgaaattcaagcatcagatagccagtgccaagcatactgt
ctcctagaagcagcagcttctcctatcttaaaaaaacttgtatgcctctgtactcttcct
gctgctaactggaaatttgacactgtcatttttgaccaaacaaggttcctcttaaaacaa
caagaaaaagtaataagtgatgctattcaccaaggtaaaaatgttgaaagagaaatgaca
ttcaagtatgctgccctcttacaccttttggtaacaattagagatgtccttttaacatgt
agcttggacacagcattgggatatttgtcaaatgcaaaagatatctacaaaagcatctta
ggctcctatttggatgacatttggcgacaactggagattgtacagtttattagggaaaaa
aagcctgaaaccagctacaagatacaagaattgcaatgtcagatactaaattggatgcaa
agtggacagcaaattaaggtgctgattataataagaatggattcagacggtgaaaaacat
ttactcattaaaatccttaacgaaatagaaggtttgacactgactgtcttacgttcgaac
aaaaaagattttctggaatccaaaggtgttttaaatggtacaagtttctgtgcagttgta
cacaatcaatatattggagcagatttcccctggagtaatttctcttttgtggtggaatac
aattttgtagaaaactcttgttgggctgaacattgtgaaaaattgaatattccttacttg
gcctttaaagtgattcttccagacacagttttaaagagaagcaccttgctggatagtttt
ggtggttttcttttggaaattcagattccatatgtgttttttgcatctgaaggacttctt
aatactccagaaatacttcagttgttagaaaccaagtataatatcacattggtggagaga
tgctgcagtgagtcattgaaactttttggaggtacagagcattatgtagtggtgacaatt
gatgaggacaccaccataattttgcaggacctagaagaattaaactgtgagaaggcatca
gacaatatcattatgagactgatggcattatcattccagtacagctattgttggataatt
ttatatgccaaaaaaccattaaactcagagtactatcttacagaaaagacacttcatcac
ctagctttgatttatgcagctttggtttcatctgggctaaaatcagaagaactggatgta
aagcttctaattgccccaggagtggaagagactgcactgctaattcgacaaattgctgac
cacaatttaatgacctcgaagagggatcctcacgaatggttggataaatcctggcttgaa
atctcaccatctaaggaagaaatgtacttacttgattttccaagtgttaatccattggtg
gctcagctcatgttaaataaaggaccttcactgaactggatactattagcaactctttgt
caacttcaggaactcctacctgaagttccagaaaaagtgttaaagcatttttgtgacatc
acttccttattcaagattagtccttctgtaaccaaatcacctcaaatttcatcacctcag
gaaaataggaatcaaactagtgcctttacttctcagacttcagcttctggctcttcagat
tctgtcattcaagaacataatgaatattaccaatattcagacttaggagagacagtgcac
gaagacacaaacgccacttcaaattataactcttcccttatgaaactaaaagaaatgcca
tgcattttaccacctgtgacttcttacaatcagaccagctactggaaagtgtccagttgt
aaccctaacataatgcagaataattctttcctgactaatatagaagcaaggaatgtgtct
ggtagttcctttctgaaccagaatgattcagagtcagatgtcttttctttgggtctaaca
gcaatgaattgtgaaaccatgatatcaccaattgacactcagaagagagttacccctaac
tttataaattatcagaaaaaggaaacacatgaagcaaaaggacctacaaacaaagaattg
tctgcccctgtcttttcactagagagttctcaatctcctcttcattggaactttaaaaga
aatgtatggcaacaacagaatcactcattcaacttacaatatggtgcagagcagaataca
tgtgacaaatggtcctctcagaaagataatttattcactaatcagcaaaaatgtctatcg
gatgagttagaaggcctcatatgtgaaagttcaaatgctgagactaaaaagactttctgg
aaagaattaccatccgtccccagtttggatttattttgtgcttctgattctaatgtaagt
caaaaagaattcaacagtctttatttctaccaaagagctggaaaatgtttaggacagaaa
aggcactctgtatcttcatctaactcaggagacaagaaatcattaacagatttcacgtgc
tcacaactaccaccattcaaaaaacgacgtctagtgtatgaaaaagtccctggtagacgt
gatggacaaactcgtctgaggtttttttga
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