KEGG   Orcinus orca (killer whale): 101273940
Entry
101273940         CDS       T05247                                 
Name
(RefSeq) LOW QUALITY PROTEIN: high mobility group protein B1-like
  KO
K10802  high mobility group protein B1
Organism
oor  Orcinus orca (killer whale)
Pathway
oor03410  Base excision repair
oor04140  Autophagy - animal
oor04217  Necroptosis
oor04613  Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:oor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    101273940
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    101273940
  09143 Cell growth and death
   04217 Necroptosis
    101273940
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    101273940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oor03036]
    101273940
   03400 DNA repair and recombination proteins [BR:oor03400]
    101273940
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oor04147]
    101273940
Chromosome and associated proteins [BR:oor03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    101273940
DNA repair and recombination proteins [BR:oor03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     101273940
   MMR (mismatch excision repair)
    Other MMR factors
     101273940
Exosome [BR:oor04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   101273940
SSDB
Motif
Pfam: HMG_box_2 HMG_box HMG_WDHD1
Other DBs
NCBI-GeneID: 101273940
NCBI-ProteinID: XP_049563468
LinkDB
Position
3:complement(94520607..94522853)
AA seq 195 aa
MGKGDPKKPRGKMSSYAFFVQTCWEEHKKKHPDASVNFSEFSKKFSERWKTMSAKEKGKF
EDMAKANNARYEREMKTYIPPKGETKKKFKNPNAPKRPPSAFFLFCSEYRPKVKGEHPGL
SIGDVAKKLGEMWNNTAAGDKQPXEKTAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEEDDDDDE
NT seq 588 nt   +upstreamnt  +downstreamnt
atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattctttgtg
caaacttgctgggaggagcacaagaagaagcacccagatgcttccgtcaacttctcagag
ttttctaagaagttctcagagaggtggaagaccatgtctgctaaagagaaaggaaagttt
gaagacatggcaaaggcgaacaacgcccgttatgaaagagaaatgaaaacttatatccct
cctaaaggggaaacaaaaaagaagttcaagaatcccaatgcacccaagagacctccttcg
gcctttttcttgttttgttctgagtatcgtccaaaagtcaaaggagaacatcctggccta
tccattggtgatgttgccaagaaactgggagagatgtggaataacactgctgcaggtgac
aagcagccttaggagaagacggctgctaagctgaaggaaaagtacgaaaaggatattgct
gcataccgagctaaagggaagcctgatgcagcaaaaaagggagtcgtcaaggctgaaaaa
agcaagaaaaagaaggaagaggaggaagatgatgatgatgatgaataa

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