Orcinus orca (killer whale): 101274828 Help Entry 101274828         CDS       T05247                                  Symbol RC3H1 Name (RefSeq) roquin-1 isoform X1   KO K15690   RING finger and CCCH-type zinc finger domain-containing protein Organism oor  Orcinus orca (killer whale) Brite KEGG Orthology (KO) [BR:oor00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:oor03000]     101274828 (RC3H1)    04121 Ubiquitin system [BR:oor04121]     101274828 (RC3H1) Transcription factors [BR:oor03000]  Eukaryotic type   Zinc finger    Cys3His zinc factors     101274828 (RC3H1) Ubiquitin system [BR:oor04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     101274828 (RC3H1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 Prok-RING_4 zf-CCCH zf-C3HC4_3 zf-C3HC4 zf-C3HC4_2 zf_CCCH_4 FYVE zf-CCCH_4 Vesi_VP2 PaaA_PaaC Baculo_IE-1 zf-RING_4 zf-RING_6 zf-RING_10 Motif Other DBs NCBI-GeneID:  101274828 NCBI-ProteinID:  XP_004269824 LinkDB All DBs Position 1:56820706..56927349 Genome browser AA seq 1135 aa AA seqDB search MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL ANIDPSPDAPPPTWEHLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSTAILPDE GAVDLPSRKTPALPNGIVSAGNTVTQLIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLL ESVPKSISALPVNPHPVPPRGPTDLPPMPVTKSLQMVPRGSQLYPAQQADVYYQDPRGAA PPFEPAPYQQGMYYPPPPQCVSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVNSQYGTQPQ QYPPMYPPHYDGRRVYPAQSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQQMEGYYP VAPHPTQIRPSYNREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP TLPPAFQQEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM MNVESKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAAPMQAMA PQGAPTKSINISDYGPYGAHSGWGVSPYSPHQNIPSQGHFSERERISMSEVASHGKPLPS AEREQLRLELQQLNQQISQQTQLRGLEAVGSRLALQREASALAGQSQPPPPPPPPPKWPG APSSEQLSLELHQVEREIGKRTRELSMENQCSLDMKSKLNASKQAENGQPEPQNKVPAED LTLTFSDVPNGSALTQENIGLLSNKTNSLNLSEDPEGGGDSNDSQRSGVTSSSAP NT seq 3408 nt NT seq  +upstreamnt  +downstreamnt atgcctgtacaagctccacagtggacggatttcctctcctgcccaatttgcactcagact ttcgacgaaacaattcgaaagcccatcagtttgggttgtggccatactgtctgcaagatg tgcctgaacaaactccaccgcaaggcttgcccgtttgaccagaccactatcaatacagac attgaactcctcccagtaaactcagcattgctgcagctagtgggtgctcaggttcctgaa cagcagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag aagtgtgtagaagaattagcactgtacctgaaaccactcagcagtgctagaggagtgggt ctgaatagcactactcagagtgttctgagtcgcccaatgcagaggaagctggtgactctg gtccactgccaactagtagaagaagaaggcaggattcgtgccatgagggcagctcgatct ttaggtgaacgaacagttacagagctcattctccagcaccagaatcctcagcaactctct tccaatctttgggcagcagtcagagctagaggctgccagttccttggaccagcaatgcag gaggaagctctaaagctggttctcctggccttagaagatggttctgctttgtcaagaaaa gtattggttctctttgtggtgcaaaggttggagccacggtttcctcaggcctctaaaact agcattgggcacgttgtccagctcctttatagagcctcctgcttcaaggtcaccaagcgt gatgaagactcttctttgatgcagctgaaagaagaatttagaacgtatgaagctctgcgg cgagaacatgactcccagatagtgcagattgctatggaagcaggcttacgaattgcacca gaccagtggtcctctttgctttatggggaccagtctcacaaatctcatatgcagtccatt attgacaagttgcagaccccagcctcttttgcacaaagtgttcaggaactaacaattgct ctccagaggactggagatccagcaaacttgaatcgactaagaccccatttggagctatta gcaaacattgaccctagtccagatgctcctcctcctacttgggaacatctagaaaatggg ctggttgctgtgcgtacagtggtacacgggttggttgattatatccagaatcacagcaaa aaaggagcagatcaacagcagcctccacagcatagcaaatataaaacatacatgtgtcga gacatgaagcagagaggaggatgccctcgtggggccagctgtacatttgcacactcacag gaggaactggaaaagtttcgtaaaatgaacaaacgtctggttcccagaagacccctgagt gcctctttgggtcaacttaatgaggtgggcctgccttcaacagctatccttccggatgaa ggtgcagtggatctgcctagcagaaaaacccctgctctgccaaatggaattgtatcagca gggaatacagtaacacagctgattccacgagggacagaccccagctacgattctagtctg aaaccaggaaagatagatcacctgagcagtagtgcccctggatcccctcctgacctgcta gaatctgtccctaagagtatttctgccttgcctgttaatccacatcctgtacctccaaga gggccaacagacctgccccctatgcctgtcaccaaatcacttcagatggtaccacgaggt tctcagttatatccagcacaacaggcagatgtttattaccaggatcctcgaggagctgct ccaccatttgaaccagcaccttatcagcagggtatgtactatcctccaccaccacaatgt gtgtcccgctttgtccgacctccaccatctgctcctgaacctggtcctccctacttggat cattatccaccgtacctccaagatcgtgtagtaaactctcaatatggcacacagccacaa cagtacccacctatgtacccaccacactatgatggccgtcgagtataccctgctcagtct tatacaagagaggagattttccgagaaagtcctatacccattgagattccacctgcagca gtaccatcctatgtaccagaatccagagaaagataccaacagatggagggttactatcca gtggctccccacccaactcagatcagaccttcgtacaacagagagcctccttacagccgg cttcctccccctccccagccccatcctagtctagatgagctacatcgaagacggaaggaa ataatggcacaactagaggaaaggaaggttatctctccacctccctttgcaccttcacca acattgcctcctgccttccaacaagaggaatttttggatgaagacttgaaggtagctggg aaatacaaaggaaatgattatagccagtactcaccctggtcatgtgacaccatcggctcc tacattggaaccaaagatgcaaaacccaaagatgttgtggcagcggggagtgtggaaatg atgaatgtggagagtaaaggaatgagagaccagcgattggaccttcagagaagagcagca gaaaccagtgatgatgacctcatcccatttggagaccgaccaacagtatctcgatttggt gccatttctcgaacttccaaaacaatatatcagggtgctgccccaatgcaggctatggca cctcagggagctcccacaaaatctattaacatttcagattatggtccgtatggagcccac agtggctggggagtttctccatattcacctcatcaaaacataccttctcagggacacttc agtgagagggagagaatatctatgtcagaagtggccagtcatggaaaaccccttccatct gctgagagggaacagctacgactagaattgcagcaattaaaccaacaaattagccaacag acccagctacgtggactagaggctgtcggtagcaggctggcgctgcagagggaggcgagc gccttggcaggccaatcacagcccccaccgccgccgccgcccccaccgaagtggcctgga gcgccctcaagtgagcagctgagcttggaactgcaccaggtggaaagggaaatcgggaag agaacccgggaactgagcatggagaaccagtgttctctggatatgaaaagcaaattgaat gcaagtaagcaagcagaaaatggacaaccagaaccacaaaataaggttccagctgaggac cttacattgacattcagtgatgtgccgaatggatcagccttgacacaagagaacatcggc ctcctatcaaacaagaccaactctctgaacctgtcagaggaccctgagggaggaggggac agtaatgactcccagagatcaggagttacatccagttctgctccctaa

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