Orcinus orca (killer whale): 101276952 Help Entry 101276952         CDS       T05247                                  Symbol COL2A1 Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism oor  Orcinus orca (killer whale) Pathway oor04151   PI3K-Akt signaling pathway oor04510   Focal adhesion oor04512   ECM-receptor interaction oor04974   Protein digestion and absorption oor05165   Human papillomavirus infection Brite KEGG Orthology (KO) [BR:oor00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     101276952 (COL2A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     101276952 (COL2A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     101276952 (COL2A1)  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     101276952 (COL2A1)  09160 Human Diseases   09172 Infectious disease: viral    05165 Human papillomavirus infection     101276952 (COL2A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oor00536]     101276952 (COL2A1) Glycosaminoglycan binding proteins [BR:oor00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    101276952 (COL2A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  101276952 NCBI-ProteinID:  XP_049550885 LinkDB All DBs Position 11:complement(38672372..38693192) Genome browser AA seq 1219 aa AA seqDB search MRKQGEAGKAGKPGERGLPGPQGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGL PGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGA QGPRGEAGTPGSPGPAGASGNPGSDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP LGPKGQTGEPGIAGFKGEQGPKGEPGPTGPQGAPGPAGEEGKRGARGEPGGAGPAGPPGE RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD AGPQGKVGPSGAAGEDGRPGPPGPQGTRGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGE AGAPGLVGPRGERGFPGERGSPGSQGLQGPRGLPGTPGTDGPKGAAGPGGPPGAQGPPGL QGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP PGPSGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGP SGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGP KGARGDSGPPGRAGDPGLQGPSGPPGEKGEPGDDGPSGPDGPPGPQGLAGQRGIVGLPGQ RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR DGAAGVKGDRGETGPLGGPGAPGPPGSPGPAGPVGKQGDRGEAGAQGPMGPSGPAGARGM PGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGPPGPAGDQGTSGPAGPSGPRGPPGP VGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQ REKGPDPMQYMRADEAAGNLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKL CHPEWKSGDYWIDPNQGCTLDAMKVFCNMDTGETCVYPSPASVPKKNWWNSKSKDKKHIW FGETINGGFHFSYGDDNLAANTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLK KALLIQGSNDVEIRAEGNSRFTYTVLKDGCTKHTGKWGKTMIEYRSQKTSRLPIIDIAPM DIGGPEQEFGVDIGPVCFL NT seq 3660 nt NT seq  +upstreamnt  +downstreamnt atgaggaagcagggtgaagctggaaaggctggaaaacctggcgagagaggccttccgggt cctcagggttacccaggtctagatggtgctaagggagaagctggtgctccaggtgtgaag ggtgagagtggttccccaggagagaacggttctccaggcccaatgggtccccgtggcctg cctggtgagagaggacggactggccctgctggcgctgcgggtgctcggggcaacgatggc caacccggccccgcagggcctccgggtcccgtgggtcctgctggcggtcctggcttccct ggtgctcctggtgccaagggtgaagctggccccactggtgctcgaggtcctgaaggcgcc cagggtcctcgcggtgaagctggtactcctgggtcccccgggccggctggtgcctccggt aaccctggatctgatggaattcctggagctaaaggatctgctggtgcccctggcattgct ggtgctcccggcttccctgggccccgtggtccacctggccctcaaggtgcaactggtcct ctgggcccgaaaggtcaaacgggtgagcctggtattgctggcttcaaaggcgaacaaggc cccaagggagaaccgggccctactggtccccaaggagcccccggtcctgctggtgaagaa ggcaaaagaggggcccgtggagagcctggtggtgctgggcccgctggtccccctggagaa agaggtgctcctggcaaccgtgggttcccaggtcaggatggtctggcaggtcccaaggga gcccctggagagcgagggcccagtggtcttgctggtcccaagggagccaatggtgaccct ggccgtcctggagagcctggcctccctggagcccggggtctcactggtcgccctggtgat gctggtcctcaaggcaaagttggtccttctggagccgctggtgaagatggtcgccctgga cctccaggtcctcaggggactcgcgggcagcctggtgtcatgggtttccctggccccaaa ggtgccaatggtgagcctggcaaagctggtgagaaaggactgcctggtgctcctggtctg agaggtctccctggcaaagatggtgagacaggagctgcaggcccccctggacctgctgga cctgccggtgaacgaggcgagcagggtgctcctgggccatctgggttccagggacttcct ggcccgcctggtcccccaggtgaaggtggaaaaccaggtgaccagggcgttcccggtgaa gctggagctcccggcctcgtgggtcccaggggtgaacgaggtttcccaggggaacgtggc tctccagggtcccagggcctccaggggccccgcggcctccctggcactcctggcactgat ggtcccaaaggtgcagctggcccaggtggcccccctggggctcagggccctccaggtctg caggggatgcccggtgagagaggagcagctggcatcgctgggcccaagggagacaggggt gatgttggtgagaaaggccccgagggagcccccgggaaggacggtggacggggtctgact ggccccattggcccccctggcccggctggtgccaacggtgagaagggagaagttggacct cctggtccttcaggaactgctggtgctcgcggcgccccgggtgaacgtggagagactgga ccccccgggcccgctggatttgctggtcctcctggtgctgacggccagcctggtgccaaa ggcgagcaaggagaggctggccagaaaggtgacgccggtgccccgggtcctcagggcccc tctggagctcccgggcctcagggtcctactggtgtgactggtcctaaaggagcccgaggc gctcaaggccccccgggagccaccggattccccggagctgcaggccgcgtcggaccccca ggttccaatggcaaccctggaccccctggcccacctggtccttctggaaaagatggtccc aaaggtgctcgaggagacagcggcccccctggccgagctggtgaccctggcctccaaggt ccttccggaccccctggcgagaagggagagcctggagatgacggtccttctggtcccgac ggtcctccaggtccccagggtctggccggtcagaggggcatcgtcggtctgccggggcag cgtggtgagcgaggattccccggcctgcccggcccatcgggtgagcctggcaagcaggga gctcctggagcatctggagaccgaggtccccctggccccgtgggtcctcctggcctgact ggacctgcgggtgaacctggacgcgagggaagccctggtgctgacggcccccctggcaga gacggtgcagctggagtcaagggtgatcgtggtgagaccggtcccttgggtggccccgga gccccagggccccctggctctcctggccccgccggcccagtcggcaagcagggagaccga ggagaagctggtgcacaaggccccatgggaccctcaggaccagctggagcccggggaatg ccaggccctcaaggcccccgaggtgacaaaggagaaacgggagaggctggcgagagggga ctgaaaggacaccgtggcttcactggtctgcagggtctgcccggcccccctggtcccgct ggagaccaagggacttctggtcctgccggcccttctggccccagaggtcctcctggcccc gtcggtccctctggcaaagatggcgctaatggaatccccggccccattggacctcctgga ccccgtggacgttcaggcgaaactggccctgctggtcctcctggaaatcctggaccccct ggccctccaggtccccctggccctggcattgacatgtccgcctttgctggcctaggccag agagagaagggccccgaccccatgcagtacatgcgggccgatgaggcagccggcaacctg agacagcacgacgccgaggtggatgccacgctcaagtccctcaacaaccagatcgagagc atccgcagccccgagggatcccgcaagaaccccgcccgcacctgccgggacctgaaactc tgccaccccgagtggaagagcggagattactggatcgacccgaaccagggctgcaccctg gacgccatgaaggttttctgcaacatggacactggcgagacctgcgtctaccccagcccg gccagcgttcccaagaagaactggtggaacagcaagagcaaggacaagaaacacatctgg tttggagaaaccatcaacggtggcttccacttcagctatggagatgacaacctggctgcc aacaccgccaacgtccagatgaccttcctgcgcctgctgtccaccgagggctcccagaac atcacctaccactgcaagaacagcattgcctacctggacgaggccgctggcaacctcaag aaggccctgctcatccagggctccaacgacgtggagattcgggccgagggcaacagcagg ttcacgtatacggttctgaaggatggctgcacgaaacacaccggtaagtggggcaagact atgattgagtaccggtcgcagaagacctcacgtctccccatcattgacattgcacccatg gacataggcgggcccgagcaggaattcggtgtggacatagggcctgtctgcttcttataa

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