Orcinus orca (killer whale): 101277122
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Entry
101277122 CDS
T05247
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X2
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
oor
Orcinus orca (killer whale)
Pathway
oor04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101277122 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oor04131
]
101277122 (VPS8)
Membrane trafficking [BR:
oor04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101277122 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
TPR_Vps41
WD40_CDC20-Fz
zf-RING_Vps41
zf-RING_11
Clathrin
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
zf-C3H2C3
zf-RING_5
WDR55
zf-C3HC4
EIF3I
PHD
Motif
Other DBs
NCBI-GeneID:
101277122
NCBI-ProteinID:
XP_033259086
LinkDB
All DBs
Position
5:66806506..67106911
Genome browser
AA seq
1426 aa
AA seq
DB search
MDNEPDHENVEQSLCAKTTDEELNKSLNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIP
QVDTPPTLESILNETDDEDDSFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
NQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
PGTAILHIKFTDDPTLAVCNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVH
NYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTIVLLDSVE
KLHVIDRQTQEELEMVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
QIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASKRK
AVVTDRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPIIVDYCLLLQRKDLLFSQVY
DKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMDIT
SLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVVMG
NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEAPPEEEIYPYIRTLLH
FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEK
AEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAM
DHIEELVSLKPCKAAELVATHFSEQIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQELL
QISPCITEQFIELLCQFSPNQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDI
HGAFLIMLKRLQSKLQEITHQDENTKEDPSLKNVEETMVETIALCQRNSHNLNQQQREAL
WFPLLEAMMAPQKLSSSAAPHLHSEALKSLTMQVLNNMAAFIALPSILQRILQDPVYGKG
KLGEIQGLILGMLDTFSYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICL
QQYKRRQEMADEIIVFSCGHLYHSFCLQSKECTIEIEGQTRWTCYKCSSINKVGKLSENS
SEVKKGRITPSQVKMSPSCHPSKGDPAVKKATSEPVLDPQQIQAFDQLCHLYRGSSRLAL
LTELSQKRGSESCRPFSGSQSGPAFTSIFQKENFQLQLIPPPVTED
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atggacaatgaaccagaccatgaaaatgtggaacagagcctctgtgccaagactactgat
gaagaactgaataagtctctcaatctggaggcttcactttcaaaattctcctacatagat
ctggacaaggaactggagttcaaaaatgatctgattgatgataaggagtttgatattcct
caagttgatactcctccaacactggaaagcatactaaatgaaactgatgatgaagatgat
tcttttgttcttgaagatcctacattgttaaatattgatactattgattctcactcctat
gatacttcgtctgtggcaagctcagatagtggcgacaggaccaacttaaaaagaaagaag
aaattacctgattctttttcactccatggatcagttatgcgacattcacttttgaaggga
atttctgcccaaatagtgtctgcagctgacaaagtagatgctggcttgcctacagcaatt
gcagtgtcgagtctgatagcagtgggtacatctcatggattggctttaatatttgatcag
aatcaagctttgcgactctgtctgggtagcactagtgttggaggtcaatatggagccatc
tctgccctcagtatcaacaatgactgctcacgacttctctgtggttttgctaaaggacag
atcactatgtgggatttggccagtggaaaacttctaagatcaataacagatgctcatcct
ccaggaacagcaatattgcatattaagtttacagatgatccaactcttgcagtttgcaac
gacagcggaggctctgtttttgaattgacatttaagagagtgatgggagtgaggacatgt
gaatctagatgcctgttcagtggttccaagggtgaagtttgctgtattgagcctctccat
tctaagcccgagttgaaagatcatcccatcacacagttttccttactggccatggcatcc
ttaacaaagatactggtcattggattgaagccatccttgaaagtgtggatgacttttcct
tatggacggatggatccttccagtgttccattgctggcctggcacttcgtggcagtgcat
aattatgtgaatcccatgcttgccttctgcagaggagatgttgttcattttctactggtt
aagagagacgaatctggagcaatacatgttactaagcaaaagcatcttcacctatattat
gacctcatcaactttacttggataaactcgcgcacgattgtgctcttggacagtgtagag
aagttgcatgtgattgatcggcagactcaagaggaattggaaatggtggagatctcagaa
gttcagttggtctataatagcagccatttcaaatctctagccactggaggaaacgtgagc
caggcactggctttggttggagagaaggcttgttatcaatccatcagtagctatggtggt
cagatcttttatttggggacaaaatctgtttatgtgatgatgctgaggagctggagagag
agagtggatcacctcctgaaacaagactgtcttacagaagccttggctcttgcatggtct
ttccatgaaggaaaagcaaaagcagtagtgggattatcaggggatgccagtaagagaaag
gctgttgttacagatcggatggtggaaatcctgttccattatgcagatcgagctctaaaa
aagtgcccagaccagggaaaaatccaagtgatggagcagcattttcaggatatggtgccc
atcatagttgattactgccttctgctgcagcgaaaggatcttttatttagccaggtgtat
gacaaattaagtgagaattcagtggccaaaggagtgtttttggagtgccttgaaccatat
attttaagtgataaattggtggggatcacaccccaggtaatgaaagacttgattgttcat
ttccaagataaaaaattgatggaaaatgtggaagccctcattgtacatatggatatcacc
agcctagacattcagcaggtagttctcatgtgttgggaaaatcggctatacgatgctatg
atttatgtctacaacagaggcatgaatgaatttattagtccaatggagaaacttttcaga
gtcattgcacctcctttgaatgcaggaaagacgctaacagatgagcaagttgttatgggc
aacaagcttcttgtatatattagctgttgtctagcaggtcgtgcctatccccttggtgac
atccctgaagatcttgttcccttggttaaaaaccaggtttttgaatttttaattcgcctg
cattcaacagaagctccccctgaggaagaaatctatccctatatacggactttgctacat
tttgacacaagagaatttctaaatgtattggcgctgacttttgaagattttaaaaatgac
aagcaagctgtagaatatcaacaacgtattgtggatattttgttgaaagttatggtggag
aattcagattttactccctcacaagtagggtgtctctttaccttccttgcccggcagctt
gcaaagcctgacaataccttgtttgtaaacagaaccctttttgatcaggtccttgaattc
ctctgtagtcctgacgatgactcccgacactcagaaagacagcaggtccttttagaattg
ctgcaggctggaggcatagttcaatttgaagagagtcggctcatccgtatggcagaaaag
gcagaattctatcaaatttgtgaatttatgtatgaacgagaacaccagtatgacaaaatt
attgattgctacttacgtgacccactaagagaggaagaagtctttaactacattcacaat
atcttatccattcctggacacagcgcagaggagaagcagtctgtatggcagaaggcaatg
gatcatattgaggagcttgtgtccctgaagccctgtaaagctgcagagctggttgctact
cacttttctgaacagattgaaacagtcattaaaaaacttcagaaccaggttttgcttttc
aaatttttgaggagtcttcttgacccaagggaaggtattcatgtaaatcaagaattgctg
cagatatctccttgtattacagagcagttcattgagctgttgtgtcagttcagcccaaac
caggttatagagacactgcaagtccttgagtgctaccgcctagaagaaactattcagatt
acccagaagtatcaacttcatgaagtcactgcctatctattagaaaagaaaggagatatt
catggtgccttcttaataatgctaaagagactacaaagcaaacttcaagagataacacat
caagatgaaaataccaaagaggatccctcactgaagaatgttgaagagaccatggtggag
acaattgccctttgccagagaaattcacataatttgaaccagcagcagagagaggcactc
tggtttccattactggaggcaatgatggcacctcagaagctgtctagttcagctgcgcct
catctgcactctgaagctctgaaatctttgaccatgcaagttctaaacaacatggcagca
tttattgcccttccatcaatcttgcaaagaatcttgcaggacccagtttatggaaaagga
aaacttggagaaatccagggacttattctgggaatgttggatacctttagctatgaacag
accctgctggaaacaacgactagccttctaaaccaagatctccattggtcattgtgtaac
ctgagagcttcagtcaccagaggactgaatcccaagcaggattactgctctatttgtttg
cagcagtacaagagacgccaagaaatggctgatgaaattattgtctttagctgtggccat
ttgtatcactcattctgtctgcaaagcaaggagtgcaccatagaaattgaggggcaaaca
agatggacgtgctacaaatgcagctcaattaacaaagtaggaaagttgagtgaaaattca
tccgaagttaaaaagggaagaataaccccatcacaggtaaaaatgtccccatcctgtcat
ccatccaaaggggatcctgctgttaagaaggcaacctcagaacctgttctggatccacag
cagatccaagcatttgaccagctttgccatctctaccgaggaagttctaggctggctctg
cttacggaactctcccagaagcgtggcagcgagagctgcaggccgtttagcggctcccag
agtggccctgccttcaccagcatcttccagaaggagaacttccagctacagctcataccc
ccacctgtgactgaggactga
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