Orcinus orca (killer whale): 101277418
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Entry
101277418 CDS
T05247
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
oor
Orcinus orca (killer whale)
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oor03041
]
101277418 (YTHDC2)
Enzymes [BR:
oor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101277418 (YTHDC2)
Spliceosome [BR:
oor03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101277418 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
Ank_2
AAA_19
HA2_N
nSTAND3
Ank
AAA_22
ATPase
PhoH
AAA_7
AAA_16
AAA_29
ABC_tran
T2SSE
UvrD-helicase
SRP54
ResIII
Motif
Other DBs
NCBI-GeneID:
101277418
NCBI-ProteinID:
XP_004267508
LinkDB
All DBs
Position
3:complement(92538398..92607915)
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AA seq
1429 aa
AA seq
DB search
MSRPSSVSHRPSAPGGGGGSGPVPCGPAGGGRAKGLKDIRIDEEVKIAVNIALERFRYGD
QREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGASRYLTVKKKDGSETAHAMMTCNLT
HNTKHAVRSLIQRFPVTSKERTELLPKTERGNVFAVEAENREMSKTSGRLNSGISQIPVK
RGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIP
CRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTL
MAGDSSLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKYPTLKLVLSSAALDVNLFMRYF
GSCPVTYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREERQQTTLTEWYSAQEN
TFKPESQRQRAVPNVTEENDLLDDGGDAIFSQLTEKDVNCLEPWLIKEMDACLSDIWLRK
DVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANVHIKASNG
WMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFD
DEKVDLDLIMHLLYNICHSCDSGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFM
LHSNMQTSDQKKILKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFV
TMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHT
KLLAPVNCPIADFLMKAPEPPPTLIVRNAVHMLKTIDAMDAWEDLTELGYHLADLPVEPH
LGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMAL
LRAFQAWQKARSDGWERAFCEKNFLSQATLEIIIGMRTQLLGQLRASGFVRARGGGDIRD
VNTNSENWAVVKAALVAGMYPHLVHVDRENVVLTGPKEKKVRFHPTSVLSQSHYKKIPPA
NGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLIFCGPARLASNALQELSSF
RADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRA
PSKPWSQVDDATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRK
ISADIEFSDESTTAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVNTDSNNY
QSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTSSNERKLN
RAFWESSMVYLIFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPF
QFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLSLGEKTTTD
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagtagcgtctcccaccggccgtcggctcctggagggggcggcggcagc
ggcccggtgccgtgtggccctgcgggaggcggccgggccaaggggctgaaggacattcgt
atagacgaggaggtgaaaatcgcggtcaatatcgctctggagcgtttccgatacggggac
cagagagaaatggaatttccttcttctttgaccagtacggaaagagcctttattcatcga
ttgagtcagtctcttggtttggtttctaaaagtaaaggaaagggagcaagtagataccta
actgtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgact
cataatacaaaacatgctgttaggagcctaattcaaagatttcctgtcaccagtaaagag
cgtactgaacttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaac
cgggaaatgagcaagacaagtgggcgactcaacagtggcatatctcagattccagtgaaa
agaggagaatctgaatttgattctttcaggcagtctctgccagtgtttgagaaacaagaa
gaaattgttaaaataattaaggaaaataaagtagttttgattgtaggagaaactgggtct
ggaaagactacacagattcctcagttccttttagatgattgctttaaaaatggtatcccc
tgccgtatattttgtactcaaccaagacgattagcagctattgctgtggctgaaagagtt
gctgcagagagaagagaaaggattggtcagacaattgggtatcagatccgtttagaaagc
agggtttctccaaagacacttctgacattttgcaccaatggggtactgcttcgtactctg
atggcaggagatagttcattgtcaactgtgacacatgttattgtggatgaagtacatgaa
agggatcgatttagtgattttttacttacaaagttaagagatttgttgcagaagtaccca
actttgaaactagttctttctagtgctgccttagatgtaaatctttttatgagatatttc
gggagttgtccagtgacatacatacagggaagaccatttgaagtaaaagaaatgtttctg
gaagacattttaagaactactggatacacaaacaaagaaatgttaaaatacaaaaaggaa
aaacaacgagaagaaagacaacaaaccacacttacagaatggtactcagctcaagagaat
actttcaagcctgaatctcagagacagagagctgtcccaaatgtaactgaagaaaatgat
ttattggatgatggtggtgatgccatcttcagtcagttgacagaaaaagatgtgaattgc
cttgaaccatggttaataaaggaaatggatgcttgtctttctgacatatggctgcgtaaa
gatgttgatgcctttgctcaggtctttcaccttattttaactgaaaatgttagtgtggat
tacagacatagtgaaaccagtgcaacagctttgatggttgctgcaggacgaggtttttca
agtcaagtagaacagttaattagtatgggagccaatgttcatattaaagcatcaaatggc
tggatggctttagattgggctaaacactttggacagactgaaattgtggatcttctagaa
tcttacagtgcttcattggaatttggaaatttagatgaaagttctttggttcaaacaaat
gggagtgatctcagtgcagaagacagagagctcctgaaagcttatcatcatagttttgat
gatgaaaaagtagacttggatttgatcatgcatcttctatacaatatctgccatagttgt
gattctggtgcaatattgattttcctgcctggatatgatgaaattgttggtctgagggat
cgcatcctgtttgatgacaagcggttcgctgacaatactcataggtaccaagtctttatg
cttcattcaaatatgcaaacatccgatcaaaagaagatattaaaaaacccacctgcaggt
gttcgaaaaataatcctttccaccaatattgctgaaaccagcatcacagtcaatgacgtt
gtctttgttattgattctggtaaagtgaaagagaaatccttcgatgcactgaattttgtt
acaatgttaaaaatggtgtggatttccaaagctagtgccatacagcgaaaaggcagggca
gggcgatgcagacctggaatttgtttccggctgttcagtagacttcgattccagaatatg
ttggaatttcagactccagaacttttgagaatgccattacaggaactttgtttacatacc
aagctcttagccccagttaattgtcctattgctgatttccttatgaaagctcctgaacct
ccaccaactttaattgtaagaaatgctgtgcacatgcttaagacaatagatgcaatggat
gcatgggaagatctcactgaacttggatatcatttggctgacttgccagtagaaccacat
cttggtaaaatggtcctatgtgctgtggtgttaaagtgtctggatcccatccttacaatt
gcctgcacactagcctatcgagatccgtttgtcctgccaacacaggcctctcaaaaacgt
gcagctatgctttgtaggaaacgtttcactgcagggactttcagtgaccacatggcactt
ctcagagcattccaggcatggcagaaggctcgaagtgatgggtgggagcgagccttttgt
gaaaagaattttctttcacaagctactctggaaataatcataggcatgagaactcagttg
cttggtcaacttagagcatcaggttttgtgagagcacgaggtggtggtgacattcgagat
gttaacacaaattctgagaactgggctgtcgttaaagctgcattggttgcaggcatgtat
cctcatttagtccacgtggacagagagaatgtagtattgacagggccaaaggagaaaaaa
gtacggtttcatcccacttcagttctcagtcagtctcactataaaaagattcctccagct
aatggtcaagctgcagcaattcaggcactgcccacagattggcttatttatgatgaaatg
accagagctcatagaatagctaatattagatgttgttcagcagtgacacctgtcactgta
ttgatattttgtggaccagctaggttggcaagtaatgctcttcaggaactttcatctttt
cgagcagatggtattcctaatgacagtagtgatagtgaaatggaagacagaactactgct
aatttggcagctttaaaacttgatgagtggctcaatttcaaactagagccagaggcagcc
agtttattgctgcagcttagacaaaagtggcatagcttatttttacgccgaatgagagct
ccatccaaaccttggtcccaagttgatgatgctaccataagagcaattatagctgtttta
agcactgaagaacagtctgcaggtttacaacaaccatctgggattggccaaaggccaagg
cctatgtcttcagaagaacttcctttggcatcatcttggaggtcaaataatagtaggaaa
atttcagcagatattgaattttctgatgagtctactactgcagaaagagtattgatgaaa
tctccatctccagcactgcacccacctcagaagtacaaagatagaggaattttacatcct
aaacgaagcactgatgacaggtcagatcagtcttctgtgaatacagacagcaataattat
caaagtccttgtgctagtccttctcctccatcctcaggaaagggctcaaaatctccttca
ccaagaccaaacatgcctattcgatacttcataatgaagagtagcaatctgagaaacctt
gaaatttctcaacagaagggtatctggtctacaacctctagtaatgagaggaagctaaac
cgagccttttgggaaagcagcatggtttacttgatattttctgttcaaggatctggacat
ttccagggattttctagaatgtcttctgagataggaagggagaagagtcaggactggggt
tcagctggactaggaggagtgtttaaggtggagtggatacgaaaagaaagtcttcccttt
cagtttgcacaccatttactcaatccttggaatgacaacaagaaagtccagataagcaga
gatgggcaggaactagaacctcaggttggtgaacagttgctccagttatgggaacgcctt
tcattgggagaaaaaaccacaactgattga
DBGET
integrated database retrieval system
