Orcinus orca (killer whale): 101279372
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Entry
101279372 CDS
T05247
Symbol
PUM1
Name
(RefSeq) pumilio homolog 1 isoform X6
KO
K17943
pumilio RNA-binding family
Organism
oor
Orcinus orca (killer whale)
Pathway
oor05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
101279372 (PUM1)
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GFIT
Motif
Pfam:
PUF
PUF_NOP9
DUF6922
SAWADEE
CFAP61_N
Motif
Other DBs
NCBI-GeneID:
101279372
NCBI-ProteinID:
XP_004266606
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Position
1:188322064..188449867
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AA seq
1186 aa
AA seq
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MSVACVLKRKAVLWQDSFSPHLKHHPQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGT
HSSPVPGSIGVAGRSQDDAMVDYFFQRQHGEQLGGGGSGGGGYNNSKHRWPTGDNIHAEH
QVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDESSKDGPKGIFLGDQWRDSAWGTS
DHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGGLGVSMVEYVLSSSPGDSCLRKGGF
GPRDADSDENDKGEKKNKGTFDGDKLGDLKEEGDVMDKTNGLPVQNGIDADVKDFSRTPG
NCQNSANEVDLLGPNQNGSEGLAQLTSTNGAKPVEDFSNMESQSVPLDPMEHVGMEPLQF
DYSGTQVPVDSAAATVGLFDYNSQQQLFQRPNALAVQQLTAAQQQQYALAAAHQPHIGLA
PAAFVPNPYIISAAPPGTDPYTAGLAAAATLGPAVVPHQYYGVTPWGVYPASLFQQQAAA
AAAATNSANQQTTPQAQQGQQQVLRGGASQRPLTPNQNQQGQQADPLVAAAAVNSALAFG
QGLAAGMPGYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAA
AAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQQPSNNLASSSFYGNNSLSSNSQSSSL
FSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRT
SSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNG
SGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNR
YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY
VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGH
VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD
QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN
VVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIV
MHKIRPHIATLRKYTYGKHILAKLEKYYMKNGVDLGPICGPPNGII
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgcatgtgtcttgaagagaaaagcagtgctttggcaggactctttcagcccc
cacctgaaacatcaccctcaagaaccagctaatcccaacatgcctgttgttttgacatct
ggaacagggtcgcaagcgcagccacaaccagctgcaaatcaggctcttgcagctgggaca
cactccagccctgtcccaggatccataggagttgcaggccgttcccaggacgacgctatg
gtggactacttctttcagaggcagcatggtgagcagcttgggggaggaggaagtggtgga
ggcggctataataatagcaaacatcgatggcctactggggataacattcatgcagaacat
caggtacgttctatggatgagctgaatcacgattttcaagcacttgctctggagggaaga
gcgatgggagagcagctcttgccaggtaaaaagttttgggaaacagatgaatccagcaaa
gatggaccaaaaggaatattcctgggtgatcaatggcgagacagtgcctggggaacatca
gatcattcagtttcccagccaatcatggtgcagagaagacctggtcagagtttccatgtg
aacagtgaggtcaattctgtactgtccccacggtcggagagtgggggactaggcgttagc
atggtggagtatgtgttgagctcatccccgggcgattcctgtctaagaaaaggaggattt
ggcccaagggatgcagacagtgatgaaaacgacaaaggtgaaaagaagaacaagggtacg
tttgatggagataagctaggagatttgaaggaggagggtgatgtgatggacaagaccaat
ggtttaccagtgcagaatgggattgacgcagacgtcaaagattttagccgtacccctggt
aattgccagaactctgctaatgaagtggatcttctgggtccaaaccagaatggttctgag
ggtttagcccagctgaccagcaccaatggtgccaagcctgtggaggatttctccaacatg
gagtcccagagtgtccccttggaccccatggaacatgtgggcatggagcctcttcagttt
gattattcaggcacgcaggtacctgtggactcagcagcagcaactgtgggactttttgac
tacaattctcaacaacagctgttccaaagacctaacgcacttgctgtccaacagttgaca
gccgctcagcagcagcagtacgcgctggcagccgcgcatcaaccccacattggtttagct
cccgctgcgtttgtccccaacccatacatcatcagtgctgcgcccccagggacggacccc
tacacagctggattggctgcagcagcgacactaggcccggctgtggtccctcaccagtat
tatggagttactccctggggagtctaccctgccagcctcttccagcagcaagctgctgcc
gctgccgcagcaacaaactctgctaatcagcagaccacccctcaggctcagcaagggcag
cagcaggttctccgtggaggagccagccagcgtcctttgaccccaaatcagaaccagcag
ggacagcaagcagatccactagtggcagctgcagcagtgaattctgcccttgcttttgga
caaggactggctgcaggcatgccaggttatccagtcttggctcctgctgcttactatgac
caaaccggtgcccttgtggtgaatgcaggagcgagaaacggccttggagctcctgttcga
cttgtagctcctgccccagtcatcattagctcctcagccgcacaagcagctgttgcagcg
gctgcagcttcagcaaatggagcagccggtggtcttgctggaacaacaaatggaccattt
cgccctttaggaactcagcagcctcagccccagccccagcagcagcccagtaacaacctg
gcatccagctctttctatggcaacaactctctgagcagcaattcacagagcagctccctc
ttctcccagggctctgcccagcctgccaacacatccttgggatttggaagtagcagttct
ctcggcgccactctgggatcagcccttggagggtttggaacagcagttgcaaactccaac
actggcagtggctcccgccgtgactccctgactggcagcagtgacctttataagaggaca
tcgagcagcttgacccccattggacacagtttttataacggccttagcttttcctcctct
cctggacccgtgggcatgcctctccctagtcagggaccaggacattcacagacaccacct
ccttccctctcttcacatggatcctcttcaagcttaaacctgggaggactcacaaatggc
agtggaagatacatctctgctgctccaggcgctgaagccaagtaccgcagcgcgagcagt
gcctccagcctcttcagccccagcagcacccttttttcctcttcccgtttgcgatatgga
atgtctgatgtcatgccctctggcaggagcaggcttttggaagattttcgaaataaccgg
tatcccaatttacaactgcgggagattgctgggcatataatggagttttcccaagaccag
catgggtccagattcattcagctgaaacttgagcgtgccacaccagctgagcgccagctt
gtcttcaatgaaatccttcaggccgcttaccagcttatggtggatgtatttggaaattac
gtcattcagaagttctttgaatttggcagccttgaacagaagctggctttggctgaacgg
attcgaggccatgtcctgtcactggcactgcagatgtatggctgccgtgttatccagaaa
gctcttgagtttattccctcagaccagcagaatgagatggttcgggagctagatggccat
gtcctgaagtgtgtgaaagaccagaatggcaatcacgtggttcagaaatgcattgaatgt
gtgcaaccccaatctttgcagtttatcatcgatgcgtttaagggacaggtgtttgctttg
tccacacatccttatggctgccgagtgattcagaggatcctggagcactgtctccctgac
cagacactccctattttagaggagcttcaccagcacacagagcaacttgtacaggatcaa
tatggaaattatgtaatccagcatgtattggagcatggtcgtcctgaggataaaagtaaa
attgtagcagaaattcgagggaatgtacttgtattgagtcagcacaaatttgcaagcaat
gttgtggagaagtgtgtcactcatgcctcccgtacggagcgcgctgtgctcatcgacgag
gtgtgcactatgaacgatggtccccacagtgccttatacaccatgatgaaggaccagtac
gccaactatgtggtccagaagatgattgatgtggcagagccagcccagaggaagatcgtc
atgcataagatccggcctcacatcgcgactcttcgcaagtacacttacggcaagcacatt
ctggccaagctggagaaatactacatgaagaatggcgttgacttagggcccatctgtggc
ccccctaatggtattatctga
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