Orcinus orca (killer whale): 101279834
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Entry
101279834 CDS
T05247
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03018
RNA degradation
oor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101279834 (LSM4)
09123 Folding, sorting and degradation
03018 RNA degradation
101279834 (LSM4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oor03019
]
101279834 (LSM4)
03041 Spliceosome [BR:
oor03041
]
101279834 (LSM4)
Messenger RNA biogenesis [BR:
oor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101279834 (LSM4)
mRNA degradation factors
5'-3' decay
Lsm complex
101279834 (LSM4)
Spliceosome [BR:
oor03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101279834 (LSM4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
101279834
NCBI-ProteinID:
XP_004277596
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All DBs
Position
3:11623818..11635908
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AA seq
139 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI
PGTGRGQPEKKPGRQAGKQ
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttgtcactgctgaaaacggctcagaatcacccaatgttggtggagctcaaa
aacggggagacgtacaatgggcacctggtgagctgcgacaactggatgaacatcaacttg
cgtgaagtgatctgcacgtccagggacggggacaaattctggcggatgcccgagtgctac
atccgcggcagcaccatcaagtacctgcgcatccctgatgagatcatcgacatggtcaag
gaggaggtggtggccaagggccgcggccgcggtggcctgcagcagcagaagcagcagaag
ggccgcggaatggggggcgctgggcgaggtgtgtttgggggccggggccgaggtggaatc
ccaggcaccggcagaggtcaaccagaaaagaagccaggcagacaggcgggcaaacagtga
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