Orcinus orca (killer whale): 101279922
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Entry
101279922 CDS
T05247
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
101279922 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oor01009
]
101279922 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oor04515
]
101279922 (PCDH1)
Protein phosphatases and associated proteins [BR:
oor01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101279922 (PCDH1)
Cell adhesion molecules [BR:
oor04515
]
Cadherins
Protocadherins
101279922 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
101279922
NCBI-ProteinID:
XP_004280278
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Position
3:66887239..66913140
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AA seq
1237 aa
AA seq
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MDCRARGLRCPQAALLILEPARMGSLRRSPGPGGQRLLPPALLLALLLLLAPSPGHATRV
VYKVPEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL
RECQNQLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLPIPEN
TNNGSLFSIPVASDRDAGPNGVASYELQVGPEAQGLFKLQVAEDQDGKQPQLIVMGNLDR
ERLDSYDLTIKVQDGGNPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI
QVKANDSDQGANAEIDYTFHQVPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAK
DRGTNPKSARAQVVVTVKDVNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS
DRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVD
SGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVVAEVTASDADSGSNAE
LVYSLEPEPAAKGLFTISPETGEIRVKTSLDREQRESYELKVVAADRGSPSLQGTATVLV
NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLTVEQDNGDFVI
QNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSN
TSHRLLTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKEL
ERRHHGLHRLVVKVTDRGKPPRSGTALVHLYVNDTLANRTLLETLLGHSLDTPLDIDIAG
DPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK
PSSKVSKGNKSKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDY
SYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLG
PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSS
PSRRTKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHD
SCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggactgcagggcccgcggcctgcgctgcccacaggcggccctcctgattctggagcct
gcccggatggggtccctgaggcgcagcccaggccctggggggcaacggttgctgccgcct
gccttgctgctggcccttctgctgctgctggctccgtccccaggccacgccactcgggtg
gtgtacaaggtgccagaggagcaaccgcccaacaccctcattgggagcctcgcagccgat
tacggttttccagacgtgggccacctatacaaactagaagtaggcgccccgtacctgcgg
gtggatggcaagacaggcgacatctttaccacggagacctctatcgaccgcgaggggctc
cgagaatgccagaaccagctccctggtgagccctgcatcctggagtttgaggtgtctatc
acggacctcgtgcagaatggcagcccccggctgctagagggccagatagaggtccaggac
atcaatgacaacacgcccaacttcgcctcaccagtcatcacgctgcccatccccgagaac
accaacaatggctcactcttctccatcccggtggcttcggaccgcgatgctggccccaat
ggtgtggcatcctatgagctgcaggtggggcccgaggcccaggggctatttaagctgcag
gtggcagaggaccaggacggaaagcagccgcagctcatcgtgatgggcaacctggaccgg
gagcgcttggactcttatgacctcactatcaaggtgcaggatggtggcaaccccccacgc
gccagcagcgccctgctgcgggtcactgtgctcgacaccaatgacaatgcccccaagttc
gagcggccgtcctacgaggctgagctgtctgagaacagccccataggacactcagtcatc
caggtgaaggccaatgactctgaccaaggtgccaacgcagagatcgactacacattccac
caggtgcccgaggttgtgaggcgtcttctgagactggacaggaacacgggacttatcact
gtgcagggccccgtggaccgtgaggacctaagcaccctgcgcttctcggtgcttgccaag
gaccgaggcaccaaccccaagagtgcccgagcccaagtggtggtgaccgtgaaggacgtg
aacgacaatgcccccaccattgagatccggggcatagggctggtgactcaccaagacggg
atggctaacatctcagaggacgtggcagaagagacagctgtggccctggtgcaggtatct
gaccgagatgagggagaaaacgcagctgtcacctgtgtggtggcaggtgacgtgcccttc
cagctccgccaggccagtgagacgggaagtgacagcaagaagaagtacttcctgcagacc
accaccccgctcgactatgagaaggtcaaagactacaccatcgagattgtggccgtggac
tctggcaaccccccactctcgagcaccaactccctcaaggtgcaggtggtggatgtcaat
gacaatgcacctgtcttcacccagagcgtcactgaggtcgccttcccagaaaacaacaag
ccaggtgaagtggtcgctgaggtcactgccagcgatgccgactcgggctccaatgctgag
ctggtttactcgctggagcctgagccggctgccaagggcctcttcaccatctcacctgag
actggagagatccgggtgaagacatcccttgatagggaacagagggaaagctacgagctg
aaggtggtggcagccgaccggggcagccccagcctccaaggcacagccaccgtccttgtc
aacgtgctggactgcaatgacaatgaccccaagttcatgctgagtggctacaacttctca
gtgatggagaacatgccggcgctgagtccggtgggcatggtgacggtcattgatggggac
aagggggagaacgcccgggtgcagctcacggtggagcaggacaatggtgattttgttatc
cagaacggcacgggcaccatcctctccagcctgagcttcgatcgggagcagcaaagcacg
tataccttccagctgaaggcggtggatggcggcgtcccacctcgctcggcctacgttggc
gtcaccatcaacgtgctggatgagaatgacaacgcgccctttatcaccgccccttccaac
acctcccaccggctgctgaccccccagacccgtctgggcgagacggtcagccaggtgaca
gctgaggacattgactctggtgtcaacgctgagctgacctatagcatcgccggtggcaac
ccttacggactcttccagattgggtcgcattccggcgccatcaccctggaaaaggagctt
gagcggcgccaccatgggctgcaccgcttagtggtgaaggtcactgaccgcggcaagccc
cctcgctctggcacagccttggtccacctgtatgtcaatgacaccctggccaaccgcacc
ctgctggagaccctgctgggccacagcctggacacgccgctggacatcgacattgctggg
gatccggaatacgagcgctccaagcagcgcggcaacatcctgtttggcgtggtggcgggt
gtcgtggccgtggccttgctcatcgccctggccgtgctcgtgcgctactgccggcaacgg
gaggccaagagtggctaccaggctggcaagaaggagaccaaggacctgtatgcccccaag
cccagcagcaaagtttccaagggaaacaaaagcaagggcaagaagagcaagtctcccaag
cccgtgaagccggtggaggacgaggatgaggccgggctgcagaaatccctcaagttcaac
ctgatgagcgatgcccctggggacagcccccgcatccacctgcccctcaactacccacca
ggcagccctgacctcggccgccactatcgctctaattccccactgccttccatccagctg
cagccccagtcaccctccgcctccaagaagcaccaggtggtgcaggacctgccaccagcc
aacactttcgtaggcactggggacacgacgtccacgggctctgagcagtactccgactac
agctaccgcaccaacccccccaaataccccagcaagcagttacctcaccgccgagtcacc
ttctccgccaccagccaggcgcaggagctgcaggacccgtcccagcacagttactacgac
agtggcctggaggagtccgagacgccgtccagcaagtcatcctcggggccccgactcggt
cccctggctctgcctgaggatcactatgagcgcaccacccccgatggcagcataggagag
atggagcaccccgagaacgacctgcgccctttgcctgacgtcgccatgacgggcacatgt
acccgggagtgcagcgagtttggccactccgacacgtgctggatgcctggccagtcatct
cccagccgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggac
cgaggagggcaggagcctgcgggcgccggcagccccagccccccggaagaccggaacacc
aaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgat
tcctgcaaggactcggccaccttggaggaaatccccctgacccagacctcggacttccca
cctgcagccacaccggcatctgcccagacggccaagcgtgagatctacctgtga
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