Orcinus orca (killer whale): 101284343
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Entry
101284343 CDS
T05247
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
oor
Orcinus orca (killer whale)
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oor04040
]
101284343 (SCN11A)
Ion channels [BR:
oor04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
101284343 (SCN11A)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
101284343
NCBI-ProteinID:
XP_049549585
LinkDB
All DBs
Position
10:complement(42811961..42949821)
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AA seq
1784 aa
AA seq
DB search
MDDRCCPVIFPDARNFRPFTPDSLAAIKKRIAIQKEKKKSKDQTAAEPQPRPQLDLKVSR
KLPMLYGDIPHELIGKPLEDLDPFYRNHKTFMVLNKKRTIYRFSAKRALFILGPFNSIRS
LAIRISVHSLFSMFIICTVIINCVFMAMTRGKDSINIDTESAEYVFTGIYIFEALVKILA
RGFILDEFSFLRDPWNWLDSIVIATAFVSYSPYIKDSSISLSSLRTFRVFRALKAISVIS
GLKVIVGALLRSVKRLIDVMILTLFCLSIFALVGQQLFMGNLNQKCVRKDCDSDYKDYCF
EKKDSTEFRICGTWMESGACSEQFECKHTNKNPDYNYTNFDSFGWSFLAVFRLMTQDSWE
KLYQQTLRTSGLYSVFFFVVVIFLGSFYLINLTLAVVTMAYEEQNKNVAAETEAKEKMFQ
EAQQLLKEEKEALVAMGIDRSSLNSLEASSFSLKKRKLFGNKKRKSFFLRKSGKGQVPGL
DSDEDSSKKPHLLEQTKRLSQNLSVEHCDEHRDPFQRQRALSAVSILTITMHEQEKSQEP
CLPCGENLASKYLVWDCSPRWLCIKKALRTVMTDPFTELAITICIIINTLFLAMEHYKMD
QSFENMLYTGNLVFTGIFMAEMCLKIIALDPYHYFHGGWNIFDSIVALLSFAEVIINSMC
PGKQSCMSLRSLRVLRVFKLAKSWPTLNTLLKIIGHSVGALGNLTVVLAIVVFIFSVVGM
QLFGSKFNCIKSNSKSHDPAVPCLRRWHMGDFYHSFLVVFRILCGEWIENMWECMQEANQ
ALCIIVFLLIMVIGKLVVLNLFIALLLNSFSNEERDGHLEGEVRKTKVQLALDRFCRAFC
FVICTLEHFCTKWCRRQHLPKEEEVTEGPEAESKGVIPLVTEMRKGPETWEEFGVLTSAP
KTLSVGHDRTWLAPLAEEEDDAESPGEDKAQPITQPEAGKQCQASELHQKTKEPTSPGAQ
SVEMDIFSEGDLYLSVQNPRKKSDATSVLSECSTTGPQDPFRRVLEMVPKKEPERCLPKG
LDCCSPCCTMDKRKFPWIIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALVFEDIYLGT
QPKIQKILNCTDSIFTYIFILEMGLKWVAFGFRKYFTSAWCWLDFIIVIVSVTSLIDLKV
LKSFRILRALRPLRALSQFEGMKVVVNALIGAIPAILNVLLVCLIFWLIFCILGVNLFSG
KFGRCVNVTDGNSVINYNIVANRSQCESGNFSWFTLKVNFDNVGMAYLALLQVATFKGWM
DIMYAAVDSRGEGQQPRFEENSLMYVYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKLGG
QDIFLTEEQKKYYNAMKKLGSKKPQRPIPRPLNKCQGLVFDLVTHQVFDIIIIILIFLNM
VSMMAESYGQSRAMELFLERLNLAFVAVFTTECLIKIFALRQYYFTSGWNLFDCVIVVIS
IVSTIVSALKTQAHIPFPPTFFRIVRLARIGRILRLVQAARGIRTLLFALMMSLPSLFNI
GLLLFLVMFIYAIFGMNCFCKVKEESGIDDIFNFKTFKGSMLCLFQITTSAGWDALLSPM
LQSKDSCNPKSENCYLSAIAITYFVSYIIISFLIVVNMYIAVILENFNIATEESEDPLGE
DDFEIFYEVWEKFDPEATQFIKYSALSDFADALPEPLRVAKPNKYQFLVMDLPMVSGDRL
HCLDILFAFTARVLGESSGLDSMKAVMEEKFMEANPFKKLYEPIVTTTKRKEEERCAAVI
QKAFRKYMMKTKCTLEDRPHSPLQTLCNGDLSSSGVAEGKVHYD
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaggtgctgcccggtgatcttcccagatgcgaggaatttccgccccttcact
cctgactctttggctgcaatcaagaagcggatcgccatccagaaggagaaaaaaaagtcc
aaagaccagacagcagcagaaccccagcctcgacctcagcttgacctaaaggtgtccaga
aagttgcccatgctctatggtgacattccccatgagctgatagggaagcccctggaagac
ttggacccattctacagaaatcataagacatttatggtgttgaacaaaaagagaacaatc
taccgcttcagtgccaaacgtgccttgttcattttggggcctttcaattcaatcagaagt
ttagccattagaatttcagtccattcattgttcagcatgttcatcatctgcaccgtcatc
atcaactgcgtgttcatggccatgactcgtgggaaggacagcattaacatagatactgag
agtgctgagtatgtcttcactgggatttatatatttgaagcattagttaaaatattggca
agaggttttattctggatgagttttctttccttcgagatccgtggaactggctggactcc
attgtcattgcaacagcgtttgtgtcctattcaccgtatatcaaggacagcagcatcagt
ctgtcatccctgcgtaccttccgagtgttcagagctttgaaagcaatttcagtaatttca
ggtctgaaggtcattgttggggccttgctgcgctctgtgaagaggcttatcgatgtgatg
atcctgactctcttttgcctcagcatcttcgccctggtaggtcagcagctcttcatggga
aatctgaaccagaaatgtgtgaggaaagactgtgactctgactataaagactattgcttt
gaaaagaaagattccactgaattcagaatatgtggcacatggatggagagcggggcttgt
tctgaacaatttgaatgcaaacataccaataaaaatcctgactataattacacgaatttt
gacagctttggctggtcttttcttgccgtgttccggcttatgacccaagattcctgggag
aagctttatcaacagactttgcgcacctcagggctctactcagtcttcttctttgtggtg
gtcatcttcctgggctctttctacttgattaacttaaccctggctgttgtcaccatggct
tacgaggaacagaacaagaatgtagctgctgagacagaagccaaggagaagatgttccag
gaagcccagcagctgttaaaggaggagaaggaggctctggttgccatgggtattgacaga
agttcacttaattcccttgaagcatcatctttttccctgaagaagagaaagctatttggt
aataagaaaagaaaatccttctttttgagaaagtctgggaaaggccaggttccaggatta
gattctgatgaagattcttcaaaaaagccacacctacttgaacaaaccaaacgactatcc
cagaatctgtcagtggagcactgtgatgagcacagagaccccttccaaaggcagagagca
ctgagcgctgtgagcatcctcaccatcaccatgcacgaacaagaaaaatcacaggaacct
tgcctcccatgtggggaaaacctggcatccaaatacctcgtgtgggactgtagcccccgg
tggctgtgcattaagaaggccctgagaaccgtgatgactgacccctttactgagctggcc
atcaccatctgcatcataatcaacactctcttcttggccatggagcattacaaaatggac
cagagttttgagaacatgttatacacagggaatttggttttcactggcattttcatggct
gaaatgtgcctaaaaatcattgcgctggatccctaccactactttcatggaggctggaac
atttttgacagcattgttgctcttctgagttttgcagaggtgataataaatagtatgtgt
ccaggaaaacaaagttgtatgtcacttcgttccttaagagtgctgagggtcttcaagtta
gccaaatcctggccaactttaaacacactgcttaagataattggccattccgttggagcc
cttggaaacctgactgtggtcttggccattgtggtctttattttctcagtagttggcatg
cagctttttggctctaaattcaattgcataaagagtaattcaaagtcccatgaccctgca
gtcccatgtttacgacgctggcacatgggggatttctaccactcctttctggtggtattc
cgcatcctctgtggggaatggatcgaaaacatgtgggaatgtatgcaagaagctaaccaa
gcactgtgcattattgtgtttctgttgatcatggtgataggaaaactcgtggtactcaac
ctcttcattgccttgctgctcaattccttcagcaatgaggagagagatggacacttggaa
ggagaggtcaggaaaaccaaagtccagttagccttggaccggttctgccgggctttttgt
tttgtcatatgcactcttgagcatttttgtaccaagtggtgcaggagacaacatttacca
aaggaagaagaggtgacagaaggccctgaggcagagagcaaaggtgtcattcccctggtc
acagagatgagaaagggcccagagacctgggaggagtttggtgtactgacttccgcacca
aagaccttgagtgtcgggcatgatcggacttggttggccccactagcagaggaagaagat
gatgctgaatcccctggtgaagataaggcacagcctatcacacaacctgaggctggaaaa
cagtgtcaggccagtgaactccatcagaagaccaaggagcccaccagtccaggagcccag
agtgtggaaatggacatattctctgaaggtgatctttatctgtcggtacagaatccccga
aagaagtctgatgctacgagtgtgctctcagaatgtagcaccactggtccacaggatccc
tttaggcgggtacttgaaatggttcccaaaaaggaaccagagagatgtttgcccaaaggc
ctggattgctgctctccatgctgtactatggacaagaggaagttcccctggatcatttgg
tggaacctgcggaaaacctgctaccaaatagtgaaacacagctggtttgagagctttatt
atctttgtgattctgctgagcagtggggcactggtatttgaagatatttaccttggtaca
caacccaaaatccaaaaaatacttaattgtactgacagtattttcacatacatttttatc
ttggagatgggtctgaaatgggtggcctttggatttaggaagtatttcaccagtgcctgg
tgctggctcgatttcatcattgtgattgtctctgtgaccagtctcatcgacttaaaggtc
ttgaagtccttccggattctgcgagcgctgaggcctctgagagcactgtcccagtttgaa
ggaatgaaggtggtagttaacgctctcataggtgccatacctgccatcctgaatgttttg
cttgtctgcctcattttctggctcatattttgtatcctgggagtaaatttgttttctgga
aaatttggaagatgtgttaatgtaacagatggaaactcagttataaattacaacattgtt
gcaaaccggagtcaatgtgaaagtggaaatttctcctggttcaccctgaaagtcaacttt
gacaatgtgggaatggcttacctcgcgctgctgcaagtggcaacatttaagggctggatg
gatattatgtatgcagctgttgattccagaggggaaggacaacagccaaggtttgaggag
aactcattaatgtatgtttacttcgtagtttttatcatctttggctcattcttcactctg
aatctctttattggtgttattattgacaacttcaaccaacagcagaaaaagttaggtggc
caagacatctttctgacagaagaacagaagaaatactataatgcaatgaaaaaattagga
tccaaaaaacctcaaaggcccatcccaaggcctctgaacaaatgccagggtcttgttttt
gacctagttacacaccaggtctttgacatcatcatcatcatcctcattttcctcaacatg
gttagcatgatggctgaatcatatggccagtccagagccatggaactcttccttgagcgt
ctcaacctggcctttgtggccgtctttacaactgagtgtctcatcaaaatctttgctttg
aggcaatactacttcaccagtggctggaatttatttgattgtgtgatcgtggtcatttct
attgttagtacaattgtttctgccttgaaaacccaggcacacattcctttccctccaaca
ttcttcagaattgtccgcttggctcggattggccgaatcctgagacttgttcaggcagca
cgaggaatcagaactctccttttcgcgctaatgatgtctcttccctctctattcaatatt
ggccttctactctttctggttatgtttatttatgccatttttggtatgaactgtttttgc
aaagtgaaggaagagtctggaattgatgacatattcaacttcaaaactttcaaaggcagc
atgctctgcctcttccagataaccacgtcggcaggctgggatgccctcctcagccccatg
ttgcaatcaaaagactcatgtaaccccaagtcagagaactgttacctctctgccatagcc
ataacctacttcgtcagttatatcatcatctcctttctcatcgtggtcaacatgtatatt
gctgtgattttagaaaacttcaatatagccactgaagaaagtgaggaccctttgggtgaa
gacgactttgaaatattctacgaagtctgggaaaagtttgacccagaagcaacacaattt
atcaaatattctgctctttctgactttgctgatgcccttcctgagcctctccgtgtggca
aagccaaataaataccaatttttagtcatggacttgcccatggtgagcggagatcgcctt
cattgcctggatatcctgttcgctttcactgctagggtacttggtgagtccagtggcctg
gatagcatgaaagcagtgatggaggagaagttcatggaagccaaccctttcaagaagtta
tatgaacccatagtcaccaccaccaagaggaaggaagaggaaagatgtgctgctgtaatt
caaaaggcctttcgaaagtacatgatgaagaccaagtgtaccttggaagacaggcctcat
tcacccctccagacactctgcaatggagacttgtccagctctggggtggccgagggcaag
gtccactacgactga
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integrated database retrieval system
