Orcinus orca (killer whale): 101284787
Help
Entry
101284787 CDS
T05247
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X2
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
oor
Orcinus orca (killer whale)
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oor03021
]
101284787 (CHD1)
03036 Chromosome and associated proteins [BR:
oor03036
]
101284787 (CHD1)
Transcription machinery [BR:
oor03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
101284787 (CHD1)
Chromosome and associated proteins [BR:
oor03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
101284787 (CHD1)
SLIK complex
101284787 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
101284787
NCBI-ProteinID:
XP_012391483
LinkDB
All DBs
Position
3:105521006..105602752
Genome browser
AA seq
1797 aa
AA seq
DB search
MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEE
DSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEERDKSSCDETESDYEP
KNKVRSRKPQNRSKSKNGKKIIGQKKRQIDSSEEEEEDEEDYDNDKRSSRRQATVNISYK
EDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEADGDP
NAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWL
KNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSW
EDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRD
YQLNGLNWLAHSWVKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT
SWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFL
GGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE
KFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQK
QYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHL
IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELR
KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ
KKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKE
ELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN
FSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQISFN
GSEGRRSRSRRYSGSDSDSVSERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGG
PLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGTERTGGRLGKVKGPTFR
ISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYIIPCHTKAAHFDIDWGKEDDSNLLI
GIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSKDLARKEAQ
RLSGAGGSKRRKVRAKKNKAMKSIKMKEEVKSDSSPLPSEKSDEDDDKDEITSVKHPNKK
VKTERDSEEKPEPDVCIKKEPEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKREN
KVKEAIQKEKDIKEEKLSESKSDSKERSKKSSVSDAPVHITASGEPVPISEESEELDQKT
FSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQ
WRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNNDQNSNLNTQVIRNPDVERLKEN
TNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHRDWDHYKQ
DSRYYSDREKHRKLDDHRSRDHRSNLEGSLKDRTHSDHRSHSDHRLHSDHRSSSEYTHHK
SSRDYRYHSDWQLDHRASSSGSRSPLDQRSPYGSRSPFEHSIEHRSTPEHTWSSRKT
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacacagtgatgaagaaagtgttagaaacagtagtggagagtcaagccagtcg
gatgatgattctgggtcagcgtcaggctctggatctggttcaagttctggaagcagtagt
gatggaagcagtagccagtcaggtagcagtgactctgactctggatctgaatcgggcagt
cagtcagagtctgagtcagacaattcccgagaaaataaagttcaagcaaaaccaccgaaa
gttgatggagctgagttttggaaatctagccctagtattctggctgttcagagatctgca
atgctcaagaagcagcagcagcagcaacatcaagcttcatctaatagtggatcagaagag
gattcttctagcagtgaagattctgatgactcatcgagtgaggtcaaaaggaaaaagcat
aaagatgaagattggcagatgtctgggtcaggatctccatctcagtctggttcagattca
gaatctgaagaagaaagagataaaagtagttgtgatgaaacagaatctgattatgagcca
aaaaacaaagttagaagtagaaaacctcaaaatagatctaagtcaaaaaatggaaaaaag
attattggacaaaaaaagagacagattgattcatctgaggaggaggaggaggatgaagaa
gactatgataatgataaaagaagctctcgtcgacaagcaactgtcaatattagctataag
gaagacgaagaaatgaaaacagattctgatgacctacttgaagtctgtggagaggatgtt
cctcaacccgaggaagaggaatttgaaacaatagaacggtttatggattgtcggattggg
agaaaaggagctactggtgctactacaaccatctatgcagttgaagcagatggtgaccca
aatgcaggatttgaaaaaaacaaggaaccaggagagatccagtatttaattaaatggaaa
ggatggtcacatatccacaatacttgggagacagaagaaacccttaagcagcagaatgtt
agaggaatgaaaaaattagataattataagaaaaaagatcaggaaacaaaaagatggttg
aaaaatgcttctccagaagatgtggaatattataattgccagcaagaacttacagatgat
ctccataagcagtatcaaatagtggagcgaataattgctcattcaaatcaaaagtcagct
gctggctatcctgattattattgcaaatggcagggccttccgtactcagagtgcagctgg
gaagatggagctctcatttccaaaaagtttcaggcgtgcatagatgagtatttcagcagg
aatcagtcaaaaactactccttttaaagactgcaaagttttaaaacaaaggccaagattt
gtagccctgaagaagcagccatcctatattggaggacatgagggattagaattaagagat
tatcaactgaatggtttaaattggcttgctcactcttgggtcaaaggaaatagttgcata
ctcgctgatgaaatgggccttggaaaaacaatacagacgatctcatttctgaactatttg
tttcatgaacaccaattatatggaccttttctattagtagtaccactctccactctcact
tcctggcaaagggagattcaaacatgggcttctcaaatgaatgctgtggtttatttaggt
gacatcaacagcagaaacatgataagaactcatgaatggatgcatccccagaccaaacgg
ttaaagtttaatatactgttaacaacttatgaaatcttattgaaggataaggcattcctt
ggaggcctaaattgggcatttataggtgtagatgaagcacatcgattaaagaatgatgat
tctcttctgtataaaactttaatagattttaagtccaatcaccgtctccttatcactgga
actcctctgcaaaactccctcaaagagctctggtctttgctacatttcattatgccagaa
aagttttcttcctgggaagattttgaagaagaacatggcaaaggcagagaatatggttat
gcaagcctccacaaggagcttgagccatttctgttacgcagggttaagaaagatgtggaa
aaatctcttcctgccaaggttgaacagattttaagaatggaaatgagtgctttacagaaa
caatattacaaatggatattaactaggaattacaaagccctcagcaaaggttccaagggc
agtacctcaggctttttgaatattatgatggagctaaagaaatgttgtaaccattgctac
ctcattaaaccaccagataataatgaattctataataaacaggaggccttacaacactta
atccgtagtagcggaaaattaattcttcttgacaaactgttaattcgcctaagagagcga
ggcaatagagttcttattttttctcaaatggtgcggatgttagatatacttgcagaatat
ttgaagtatcgtcaattcccctttcaaagattagatggatcaataaaaggagagctgagg
aaacaagctctagatcattttaatgctgaaggatcagaggatttctgctttttgctttcc
acaagagctggaggtttaggaattaacttagcctcagctgacactgttgttatatttgat
tctgattggaatccacaaaatgatcttcaggcacaggctagagctcatcgaattgggcaa
aagaaacaggtgaacatttatcgtctagttacaaagggatcagttgaagaggatattctt
gaaagggccaaaaagaagatggttttagatcatcttgtgattcaacgaatggacacaact
gggaagacagtattacacacgggttctgctccctcaagttctactcctttcaataaagaa
gagttatcagccattttaaagtttggtgctgaggaactttttaaggagcccgagggagaa
gaacaagagccccaggaaatggatatagatgaaatcttgaagagggctgaaactcatgaa
aatgaaccaggacctttaactgtaggagatgaattactttctcagttcaaggttgccaac
ttttcaaatatggatgaggatgacattgagttggaacctgaaagaaattcaaagaattgg
gaagaaatcattcctgaagatcaaagaagacgattagaagaggaagaaagacaaaaggaa
cttgaagaaatttatatgctccccagaatgagaaactgtgcaaaacagattagtttcaat
ggaagtgaagggaggcgcagtagaagtaggagatactctggatctgatagtgattcagtc
tcagaacggaaaaggccaaagaaacgtggaagaccacgaactatccctcgggaaaatatt
aaaggatttagtgatgcagaaattcggcggtttatcaagagttacaagaaatttggtggc
cctctggaaagattagatgcaattgctcgagatgctgaattagttgataagtcagagaca
gacctaagacgactaggagaattggtacataatggttgcattaaagctttaaaggacaat
tcttcaggaacagaacgaacaggtggtagacttggaaaagtaaagggtccaacattccga
atatcaggagtacaagtgaatgccaagctagtcatctcccatgaagaagaattaataccg
ttgcacaaatccattccttcagacccagaagaaagaaagcagtatatcatcccatgccac
acgaaggcagctcattttgatatagactggggcaaagaagatgattccaatttgttaatt
ggtatctacgaatatggatatggaagctgggaaatgattaaaatggatcctgacctcagt
ctgacacacaagattcttccagatgatcctgataaaaaaccacaagcaaaacagttacag
acacgtgcggactacctcatcaaattacttagtaaagatcttgcaagaaaagaagctcag
aggctttctggtgcaggaggttcaaaaaggaggaaagtaagagctaagaagaataaagca
atgaagtctataaaaatgaaagaggaagtaaagagcgattcttctcccctgccctcagaa
aagtctgatgaagatgatgataaggatgagatcacttctgtgaaacatccaaataaaaaa
gttaaaacagaaagagacagtgaagaaaaacctgagccagatgtttgtataaagaaggaa
ccagaagaaaagagggaagcgaaagaaaaggaaaataaaagagaacttaaaagggagata
aaagaaaaagaggataagaaagatataaaggaaaaagattttaaagagaaaagagaaaac
aaagtaaaagaagctatacagaaagaaaaagacataaaggaagaaaagttgagtgaatcc
aagtctgatagcaaggaaagatctaagaaatcttcagtgtcggatgctccagttcatatc
actgcaagtggtgaaccagttcccatatctgaagaatctgaagagctagatcagaagaca
ttcagcatatgtaaagaaagaatgaggcctgtcaaagcagctttgaagcaacttgatagg
cccgagaaaggcctttcagaaagagaacaactggaacatactagacagtgcttaataaaa
attggagaccatatcacggaatgtctgaaagagtatacaaatcctgaacaaatcaagcag
tggagaaaaaacctgtggatttttgtatctaagtttactgagtttgatgcaagaaaatta
cataaattatataagcatgctattaaaaaacggcaggaatctcagcaaaataatgaccag
aacagcaacttgaatactcaagtgattagaaatccagatgtggaaagattaaaagagaat
acaaatcatgatgatagcagcagggacagttactcatctgataggcacttatctcaatat
catgatcatcataaagaccgacatcagggagattcttataaaaagagtgactctaggaaa
agaccctattcttcttttagtaatggtaaagatcatcgtgattgggatcactacaagcaa
gacagcagatactatagtgatagagagaaacacagaaaactggatgatcacaggagtaga
gaccacaggtcaaatttggaaggaagtttaaaagacagaactcattctgatcatcgttct
cattcagatcatcggttgcattcagaccatcggtcaagttctgaatatacacaccataaa
tcttccagggattataggtatcactcagattggcagttggaccatagagcttccagtagt
ggctctagatcaccactagatcagaggtctccttatggctccagatctccatttgaacac
tcaattgaacacagaagtacacctgagcatacctggagtagtcggaaaacataa
DBGET
integrated database retrieval system
