Orcinus orca (killer whale): 101284931
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Entry
101284931 CDS
T05247
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X3
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101284931 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oor03019
]
101284931 (MTREX)
03041 Spliceosome [BR:
oor03041
]
101284931 (MTREX)
03009 Ribosome biogenesis [BR:
oor03009
]
101284931 (MTREX)
03016 Transfer RNA biogenesis [BR:
oor03016
]
101284931 (MTREX)
Enzymes [BR:
oor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101284931 (MTREX)
Messenger RNA biogenesis [BR:
oor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101284931 (MTREX)
Spliceosome [BR:
oor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101284931 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
101284931 (MTREX)
Ribosome biogenesis [BR:
oor03009
]
Eukaryotic type
Pre-60S particles
Helicases
101284931 (MTREX)
Transfer RNA biogenesis [BR:
oor03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101284931 (MTREX)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
101284931
NCBI-ProteinID:
XP_004275192
LinkDB
All DBs
Position
3:complement(142711083..142848068)
Genome browser
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKGKWKGPPGSAEKAGKHFDGKLQSESTNIGKN
KRDADFEGTDEPIFGKKPRVEESITEDLSLSDLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKSDE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FSEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcttttggggatgagctcttcagcgtgtttgaggacgactcgaccactgcg
cccggagccaaaaaagacaaggagaaggggaaatggaaggggccgccagggtctgcggaa
aaggccggaaaacattttgatggtaaattacaatctgagtcaactaatattggaaaaaac
aagagagatgcagacttcgagggcacagatgaacccatttttggaaagaagcccagggta
gaagagtcaataactgaagacttaagtttgtcagacttgatgcccagggtcaaggtacaa
tcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaagattat
ctaccacttaaacctcgcgttggaaaagctgcaaaggaatacccgttcattcttgatgct
tttcaaagagaagccattcagtgtgttgataataatcagtctgttctagtatctgcacat
acatcagcaggaaaaactgtatgcgctgaatatgccattgcattggccttaagggaaaaa
cagcgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgtgaaatg
tatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcctacagca
tcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttctgaagtt
atgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattcagagcgt
ggtgttgtgtgggaagaaactattattttgcttcctgataatgttcactatgtctttctt
tcggctactattccaaatgcccggcagtttgctgaatggatttgccacttacacaaacag
ccttgtcatgtaatttacacagattatcggcctactccattacagcactacatttttcca
gcagggggagatggtctgcaccttgtggttgatgaaaatggtgacttcagagaagataat
tttaatactgcgatgcaggtacttcgagatgctggtgatttggcaaaaggagatcagaag
gggagaaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatgattatg
gaaagaaactttcaacctgtaattattttcagttttagtaagaaagattgtgaagcctac
gcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggttgaagaa
gtattcagtaacgcaattgactgcttgtcagatgaagataaaaagctccctcaggttgaa
catgtacttcctctcttgaagaggggcattggtattcaccatggtggtttacttcctatt
ttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttatttgccact
gagacttttgctatggggattaacatgccagctagaactgttttatttacaaacgcccga
aaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatgtctggt
cgtgctggaaggaggggaatggatgacagaggaattgtaattcttatggtagatgaaaag
atgagcccaacaattggaaaacaactacttaagggctcagctgatccactaaatagtgct
ttccatttgacctacaacatggtcttgaacttactacgagtagaagaaataaatcctgag
tacatgttggaaaaatccttctaccagtttcagcattatagagcaattccaggagtagta
gagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaagaaagt
gtagtcatctattataagattaggcagcagcttgccaaattgggtaaagaaattgaagaa
tatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggtaaaggta
aagaatgaaggagacgattttggctggggtgtagtggtgaatttctcaaaaaaatcaaat
gttaagcctaattctggtgaactggatcctttatatgtagtggaagtacttctgcgctgt
agcaaagagagcttgaaaaattcagctactgaggctgcaaaaccagctaaatctgatgag
aaaggagagatgcaggttgttccagtgttggtgcatctcctgtccgctatcagcagtgtt
aggctttacattcctaaagaccttcgaccactggacaatagacagagtgttttaaaatca
atacaggaagttcagaaacgttttcctgatggtgttcccttattagatcctattgatgac
atgggcattcaagatcaaggactgaaaaaagtcatccagaaagtagaggcttttgagcat
cgaatgtattctcatccacttcacaatgatccaaatctggaaactgtgtatacactttgt
gaaaaaaaagcacagattgcaatagacattaaatccgcaaagcgagaactaaagaaagca
agaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggaggttggga
tttgctacgtcttctgatgtcatagagatgaaaggacgagtggcttgtgaaataagcagt
gctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctatcagca
gaacaggcaacggcactactaagctgctttgtgtttcaagagaattctagtgagatgccc
aaattaacagagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaaagaatt
gcaaaagtttcagcagaagccaaattggaaattgatgaggagacttacctaagctcattt
aaacctcacttaatggatgtagtatatacctgggcaactggagctacatttgcccatatc
tgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctggaagaa
ctacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaaaataaa
ttttcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctctaccta
taa
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