Orcinus orca (killer whale): 101285176
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Entry
101285176 CDS
T05247
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X2
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101285176 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oor03019
]
101285176 (PARN)
Enzymes [BR:
oor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101285176 (PARN)
Messenger RNA biogenesis [BR:
oor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101285176 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
T6PP_C
NCBP3
Motif
Other DBs
NCBI-GeneID:
101285176
NCBI-ProteinID:
XP_004270210
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All DBs
Position
16:complement(61565784..61733206)
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AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYASPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLNLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPSDLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWINDTS
AFVSLSQPEQVPIAVNTSRYAESYRIQTYAEYVGTKHEEKQIKRKWTEDSWKEVERKRLN
TQCISYALQNHCYHANSLTATSTVGKRNLSPSQAEGVLEARVSGEISDTELEQTDPCAES
LSEGRKKAKKLKRMKKDLSPTGSISDSSAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatctccacaaagtgtaccaagccatagag
gaggcggacttcttcgccatcgatggggagttttcaggaatcagcgatggaccctcggtc
accgcattaacaaatggttttgacactccggaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagttcggcctttgcacttttaagtatgactacacagat
tcaaagtatataacaaagtcttttaacttctatgttttcccgaaacccttcaatagatct
tcaccagatgtcaaatttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagtttttcgcaacggaattccatacttaaaccaggaagaagaaaga
cagttaagagagcagtatgatgaaaaacgtttacagtccaacggtgcaggcgctttgtcg
tacgcgtctcctaacacttcaaaatgtcccgtgacgattcctgaggatcagaagaagttt
attgaccaagtggtagagaaaatagaagatttattacaaagtgaagaaaacaagaacttg
aatttagagccatgtactgggttccaaagaaaactaatttatcagactttgagctggaag
tatcccaaaggcattcatgttgagactttagaaactgaaaagaaagagcgctatattgtt
atcagcaaagtagatgaagaagaacgtaaaagaagagagcagcagaaacacgctaaggaa
caggaagaactgaatgatgctgtggggttttctagagtcattcatgccattgctaattcg
gggaaacttgtcattggacacaatatgctcttggatgtcatgcacacggttcatcagttc
tactgccctctgccctcggacttaaatgagtttaaggagatgacaacatgtgtcttcccc
agactcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcggaattggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgcagaaggttttccaagttatgacacagcttctgaacagctccacgaggcaggc
tatgatgcttatatcacaggactatgtttcatctccatggcaaactacctaggttctttt
cttagtcctccaaagattcatgtgtctgccagatcaaaactcatcgaacctttttttaac
aagctatttctcatgagagtcatggatatcccctatctaaacttggaaggaccagacttg
cagcctaaacgtgatcacgtcctccatgtgacattccccaaagaatggaaaacgagtgac
ctttaccagcttttcagtgcctttggtaacattcagatatcctggatcaatgacacatca
gcatttgtttctctcagccaacctgaacaagtaccaattgctgtcaataccagcagatat
gcagagagctatcggatccagacctatgctgaatatgtggggacaaagcatgaggagaag
cagatcaagagaaagtggacagaagacagttggaaggaggttgagagaaagcggttgaac
acgcagtgcatctcctatgctttgcagaatcactgttaccacgccaatagtctcacagcc
accagcacagtaggaaagagaaatctgagtcccagtcaagcagaaggtgtcctggaggcc
agagtatcaggggagatttctgacactgagcttgagcagacagatccctgtgcagaatcc
ctctcagagggaaggaaaaaggccaagaaattaaaaaggatgaagaaggacctttctccg
acaggaagcatctcggacagctcagccaagctctttgaggtccctgacacgtggtaa
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