Orcinus orca (killer whale): 101289427
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Entry
101289427 CDS
T05247
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03440
Homologous recombination
oor03450
Non-homologous end-joining
oor04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101289427 (RAD50)
03450 Non-homologous end-joining
101289427 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
101289427 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oor03032
]
101289427 (RAD50)
03400 DNA repair and recombination proteins [BR:
oor03400
]
101289427 (RAD50)
DNA replication proteins [BR:
oor03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
101289427 (RAD50)
DNA repair and recombination proteins [BR:
oor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
101289427 (RAD50)
BRCA1-C complex
101289427 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
101289427 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
DUF2703
AAA_29
Motif
Other DBs
NCBI-GeneID:
101289427
NCBI-ProteinID:
XP_004279946
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All DBs
Position
3:complement(75359738..75593974)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELVAVQRSMVCTQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRQTQGQKVKECQTELKYLKQNKEKACDIRDQITRKEAQLTSSKEI
VKSYENELDPLKNRLKEIEQNLSKIMRLDNEIKALDSRKKQMEKDNSELEQKMEKVFQGS
DEQLNDLYHNHQRTVREKERRRVECQRELEKLNKESRLLNEEKSELLVEQGRLQLQADRH
QEHMRARDSLIQSLATQLELDGFEHGPFNERQIKNFHKLVRERQEKEAETARQLMNDFAE
KETLKQKQIDEIRDKKTGLGRIIELKSEILTKKQSELKNVKYELQQLEGSSDRILELDQE
LTKAERELSKAEKNSNVETLKTEVISLQNEKADLDRTLRKLDQEMEQLNHHTATRTQMEM
LTKDKADKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
LASAEQNKNHINNELKRKEEKLSSYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDEHQSCCPVCQRVFQTEAELQEVINDLQSKLRLAPDKLKSTESELK
KKEKRRDEMLGLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEEQETLLGTIIP
EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGLDLDRTVQQVNQEKQEKQHKLD
TVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQS
LYREIKDAKEQVNPLETTLEKYQQEKEELINKKNTSNKIAQDKINDIKEKVKNIHGYVKD
IENYIQDGKDDYKKQKETELNKVIAQLSECEKHKEKINKEMGIMRQDIDTQKIQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQMKNEHQKLEEKIENIKRNLGSAIGRQEG
YEEEIIRFKKELRDPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTPLDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSISSLGSNVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatcgaaaagatgagcattctgggcgtgcggagttttggaatagaggataaa
gataaacaaattatcacattcttcagtcccctcacaattttggttggacccaatggggcg
gggaaaacgaccatcattgaatgtctaaaatatatttgtactggagattttcctcctgga
accaaaggaaatacattcgttcatgatcccaaggttgctcaagaaacagatgttagagca
cagattcgtctgcagtttcgtgatgtcaatggagaacttgtagctgtgcagagatctatg
gtttgtactcagaaaagcaaaaagacagaatttaaaaccctggaaggagtcattactaga
acaaagcatggcgaaaaggtcagtctcagctccaagtgtgcagaaattgaccgagagatg
ataagttctcttggggtttccaaatctgtgctaaataatgtcattttctgtcaccaagaa
gagtctaattggcctttaagtgaaggaaaggctttgaagcaaaaatttgatgagattttt
tccgcaacaaggtacattaaagcgttggaaacacttcggcaggtacgtcagacacaaggt
cagaaagtaaaagaatgtcaaacagaactaaaatatctgaagcaaaataaggaaaaagct
tgtgatattcgcgatcagattactcgtaaggaagctcagttaacatcatcaaaggaaatt
gtcaaatcctatgagaatgaacttgatccattgaagaatcgtctaaaagaaattgaacaa
aatctctcaaaaataatgagactcgacaatgaaattaaagctttggatagccgaaagaag
caaatggaaaaagataatagtgaactggaacagaaaatggaaaaggtttttcaagggtct
gatgagcagctaaatgatttatatcacaatcaccagagaacagttagggagaaagaaagg
agacgggtagaatgtcagcgtgaactggaaaaattaaataaagaatctaggcttctcaat
gaagaaaaatcagaactacttgttgaacagggtcgtctacagctacaagcagatcgtcat
caagaacatatgcgagctagagattcattaattcagtctttggcaacacaactagaattg
gatggctttgagcatggaccattcaatgagagacagataaaaaattttcacaaacttgtg
agagagaggcaagaaaaggaagcagaaactgccaggcaactgatgaatgactttgcagaa
aaagagactctgaaacaaaaacagatagatgagataagggataagaaaactggactggga
agaataatagaactaaaatcagaaatcctaactaagaagcagagtgagctgaaaaatgtg
aagtatgaattacagcagttggaaggatcttcagacagaattcttgaactggaccaggag
ctcacaaaagctgaacgtgagctaagcaaagctgagaaaaacagcaatgtagaaactcta
aaaacagaagtaataagccttcaaaatgagaaagcagatctagacaggaccctgcgtaaa
ttggaccaggagatggagcagttaaatcatcatacagcaacacgtacccagatggagatg
ctgaccaaagacaaagctgacaaagatgaacaaatcagaaaaataaaatctaggcacagt
gatgaattaacttcattgttaggatattttcccaacaaaaaacagcttgaagactggctt
catagtaaatcaaaagaaattaatcagaccagggacagacttgccaaattgaacaaggaa
ctggcttcagctgagcaaaataaaaatcatataaataatgagctaaaaaggaaggaagag
aagttgtccagctatgaagacaaactgtttgatgtttgtggtagccaggattttgaaagt
gacttagacaggcttaaagaagaaattgaaaaatcctcaaaacaacgagccatgctggct
ggagctacggcagtttactcccaattcattactcagctaacggatgaacaccagtcgtgt
tgccctgtctgtcagagagtttttcagacagaagctgaattacaagaagtcatcaatgat
ttgcagtctaagctgaggcttgctccagataagctcaagtcaacagaatcagaactaaag
aaaaaagaaaagcggcgtgatgaaatgctgggactagtgcccatgaggcaaagcataatt
gatttgaaggagaaggaaataccagaattaagaaacaaactgcagaatgtgaacagagac
atacagcgcctaaagaatgacatagaagaacaggaaacacttttgggtacaattatacct
gaggaagaaagtgctaaagtgtgtctgacagatgttacaattatggagaggttccagatg
gaacttaaggatgttgaaagaaaaattgcacaacaagcagctaaactccaaggactagat
ttggatagaactgttcaacaagtaaaccaggaaaaacaagaaaagcaacacaaattagat
acagtttccagtaagattgaattgaatcgtaagcttatacaggaccagcaggaacaaatt
cagcacctaaaaagtacaacaaatgaacttaaatcagagaaacttcagatatccactaat
ttacaacgtcgtcagcaactggaggagcagactgtggaattatccactgaagttcagtcc
ttatacagagaaataaaggatgctaaagagcaggtaaaccctttggaaacaacattggaa
aagtaccagcaggagaaagaagaattaatcaacaaaaaaaatacaagcaacaaaatagca
caggataaaataaatgatatcaaagagaaggttaaaaatattcatggttatgtgaaagac
attgagaattatattcaagatggaaaagatgactataagaagcaaaaagaaactgaactt
aataaagtaatagctcaactaagtgaatgtgagaaacacaaagaaaagattaataaggaa
atgggaatcatgagacaagatattgatacacagaagatacaagaaaggtggctacaggat
aaccttactttaagaaaaaggaatgaagaactaaaagaagttgaagaagaaagaaaacaa
catttgaaggaaatgggtcaaatgcaggttttacaaatgaaaaatgaacatcagaagttg
gaagaaaaaatagaaaatataaaaagaaatctcggttcggcaatagggcgacaggaaggt
tatgaggaagaaattattcgttttaagaaagaacttcgagaccctcaatttcgggatgcc
gaggaaaagtatagggaaatgatgattgttatgagaacaacagagcttgtgaacaaggat
ctggacatttattataagacccttgaccaagcaataatgaaatttcacagtatgaaaatg
gaagaaatcaacaaaattattcgtgacctttggcgaagtacctatcgtggacaagatatt
gaatacatagaaattcgatctgatgccgatgaaaatgtatcagcttctgataaaaggcgg
aattacaactaccgagtggtgatgctaaagggagacacgcccttggatatgcgaggacga
tgcagtgctggacaaaaggtattagcctcactcatcattcgcctagccctggctgaaaca
ttctgcttaaactgtggcatccttgctttggatgagccaacgacaaaccttgaccgagaa
aacattgaatctcttgcacatgctctggttgagataataaaaagtcgctcacagcagcgt
aacttccagcttctggtgatcactcatgatgaagattttgtggagctcttagggcgttct
gaatatgtggagaaattctacaggattaagaagaacattgatcagtgctcagagatcgtg
aaatgcagtattagttccctaggatctaatgttcattaa
DBGET
integrated database retrieval system
