Orcinus orca (killer whale): 101289648
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Entry
101289648 CDS
T05247
Symbol
VPS4A
Name
(RefSeq) vacuolar protein sorting-associated protein 4A isoform X3
KO
K12196
vacuolar protein-sorting-associated protein 4
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03250
Viral life cycle - HIV-1
oor03272
Virion - Hepatitis viruses
oor04144
Endocytosis
oor04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101289648 (VPS4A)
03272 Virion - Hepatitis viruses
101289648 (VPS4A)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
101289648 (VPS4A)
09143 Cell growth and death
04217 Necroptosis
101289648 (VPS4A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oor04131
]
101289648 (VPS4A)
03400 DNA repair and recombination proteins [BR:
oor03400
]
101289648 (VPS4A)
Membrane trafficking [BR:
oor04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
101289648 (VPS4A)
DNA repair and recombination proteins [BR:
oor03400
]
Eukaryotic type
Check point factors
Other check point factors
101289648 (VPS4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Vps4_C
MIT
AAA_lid_3
TIP49
AAA_16
AAA_22
AAA_14
AAA_5
RuvB_N
IstB_IS21
AAA_25
DUF815
AAA_17
AAA_2
AAA_18
AAA_33
NPHP3_N
nSTAND3
RNA_helicase
AAA_24
PhoH
ResIII
AAA_28
AAA_7
Mg_chelatase
NACHT
Parvo_NS1
YhdB
bpMoxR
ABC_tran
AAA_30
TPR_2
Motif
Other DBs
NCBI-GeneID:
101289648
NCBI-ProteinID:
XP_004273254
LinkDB
All DBs
Position
20:complement(17442897..17453717)
Genome browser
AA seq
437 aa
AA seq
DB search
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC
MQYLDRAEKLKDYLRNKEKHGKKPVKENQSESKGSDSDSEGDNPEKKKLQEQLMGAVVME
KPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENE
SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARA
QMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCG
PSRTNPSIMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNA
DDLLKVKKFSEDFGQES
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgtcaaccctccagaaagccattgatctggtgacaaaagccacagaagaggat
aaagccaagaactacgaggaggccctccggctctaccagcatgccgtggagtatttcctg
catgctatcaaatatgaggcacacagcgacaaagccaaggagagcattcgagccaagtgc
atgcagtacctagaccgggcagagaagctgaaggattatttacgaaataaagagaagcat
ggcaagaagccagtcaaagagaaccagagcgagagcaagggcagcgatagtgacagtgaa
ggggataatccagagaaaaagaaattgcaagaacagctgatgggtgctgtcgtgatggag
aagcccaacattcggtggaatgacgtggccgggctggagggggccaaggaggccctcaaa
gaagctgtcattttgccaattaaattcccacacttgttcacaggcaagcgtaccccttgg
cggggaatactgctcttcggaccccctggcacagggaaatcctacctggccaaagcagtg
gcaacggaggccaacaactctaccttcttctctgtgtcctcctcagacttgatgtctaag
tggttgggggagagtgagaagctagtcaagaacctgtttgagctggccaggcagcacaag
ccctccatcatcttcattgacgaggtggattcgctctgcggatcccgcaacgaaaatgag
agtgaggccgcccgaaggatcaaaacggagttcctggtccagatgcagggggtggggaat
aacaatgatgggactctggtacttggtgccacaaacatcccgtgggttttggattcagcc
attagaaggaggtttgaaaagcgaatttatatcccattgccggaggaggctgcccgtgcc
cagatgttccggttgcatctggggagcactcctcacaacctcacagacgccaacatccac
gagctggcccggaagacggaaggctactcgggcgcagacatcagcatcatcgtgcgggat
tccctcatgcagcccgtgaggaaagtacagtcagcgacacacttcaaaaaggtctgtggc
ccttcccgcaccaaccctagcattatgatcgacgaccttctgaccccatgctcaccaggg
gacccaggggccatggaaatgacttggatggatgtccccggtgacaaactcttagagcct
gtggtttgcatgtcggacatgctccggtctttggccaccactcggcccaccgtgaatgca
gatgacctcctgaaagtgaagaaattctcagaggactttggacaggagagttaa
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