Orcinus orca (killer whale): 101289696
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Entry
101289696 CDS
T05247
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
oor
Orcinus orca (killer whale)
Pathway
oor05016
Huntington disease
oor05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
101289696 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
101289696 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oor03019
]
101289696 (HTT)
04131 Membrane trafficking [BR:
oor04131
]
101289696 (HTT)
03029 Mitochondrial biogenesis [BR:
oor03029
]
101289696 (HTT)
Messenger RNA biogenesis [BR:
oor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101289696 (HTT)
Membrane trafficking [BR:
oor04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
101289696 (HTT)
Mitochondrial biogenesis [BR:
oor03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
101289696 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
101289696
NCBI-ProteinID:
XP_004265213
LinkDB
All DBs
Position
4:complement(152683666..152821578)
Genome browser
AA seq
3123 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQPPPPPPPQPPQPPPQAQPPPQPQSPPPPPPPPPP
GPAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCS
DDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHL
VRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFI
ANLKCSSPTVRRTAAGSAVSICQHSRRTQYFYSWLLSVLLGLLVPVEEERSALLILGVLL
TLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYELTLHYTQHQDHNVVTGA
LELLQQLLRTPPPELLRVLTTAGGIGQLTAAKDEPGCRSRSGSIVELIAGGGSSCSPVLS
RKQKGKVLFGEAAALEDDSESRSDGSSPTFSASVKGEIGGELAASSGVSTPGSAADSVGH
DIITEQPRSQHTLQTDSVDLTGCDLTSGATDGDEEDILSHSSSQISAVPSDPAMDLNDGT
QASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGADSQYPGMQVGQPQDEDEDAAVVLPDE
DAEAFRNSSIALQQAHLLQSMGHSRQPSDSSIDKFVSRDEAAEPGDPENKPCRIKGDIGQ
SSDEDSAPLVHCVRLLSASFLLTGEKHALVPDRDVRVSVKALALSCVGAAVALHPESFFG
RLYRAPLDTMEYPEEQYVSDILNYIDHGDPQVRGATAILCGTLVSSILSRSRFHVGDWMG
TVRTLTGNTFSLADCIPLLQKTLKDESSVTCKLACTAVRLCVMSLCSSSYSEWGLQLLTD
MLALRSSSYWLVRTELLETVAEIDFRLVSFLEAKAENLHRRAHHYTGLLKLQERVLNNIV
IYLLGDEDPRVRHVAAASLTRLVPKLFYKCDQGQADAVVAMARGQSSVHLKPLMHEAQPP
SHFSASTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHELITSTTRALTFGCCEALCLL
STAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMVTMILTLLSSAWFPLDLSAHQDALIL
AGNLLAASAPRSLRSSWASEEEASPAATKQEEVWPALGDRTLVPMVEQLFSHLLKVVNIC
AHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQVSVPVSPKKGGEASPASRP
SETSGPVAATKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQSNTEKFGAFLRSALD
VLSQILELATLQDIGKCVEEILGYLKSCFSREPVMATVCVQQLLKTLFGTNLASQFDGLS
SNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQDHDTSGWFD
VLQKVSTQLKTNLTSVAKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLDLL
AQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSK
QIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVV
SMLLRLIQYHQVLEMFILVLQQCHKESEDKWKRLSRQVADIILPMLARQQMHIDSHEALG
VLNTLFEILAPSSLRPVDMLLRSMFVTPDTLASVSTAQLWIAGILAILRVLISQSTEDIV
LSRIQELSFSPYLLCCPIINRLRDGGSNSVLEEHSEGRQTKDLPEETFSRFLLQLVGILL
EDIVTKQLRVEMSEQQHTFYCQELGTLLMCLIHIFKSGTFRRITAAASRLLTDGADGSFY
GLESLNAWVRSMVPTHPALVLLWCQILLLVSHTDYRWWAEVQQTPRRRSLSSTKSLSPQM
SGEDEDSDVASKLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISLSHE
PPVQDFISAVHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHLSQSGAVLTLYV
DKLLCTPFRVLAHMVDTLACRRVEMLLAANLQNSTAQLPAEELSRIQEHLQSSGLAQRHQ
RLYSLLDRLRLTTAPASRGPAPLVTPHPLDGDGPLALETVSPDKDWYVRLVKSQCWTRSD
SALLEGAELVNRIPPGDLNAFMMNSEFNLNLLAPCLGLGVREICAGRKSPLFAAARTATL
DRVASVVQQLPAVHHVFQPFLPAEPTAYWSKLDDLFGDAVLYRTLTTLARALAQYLLVFS
RLPGHLHLPPEKERDTVKFVVMTLEALSWHLIHEQIPLSLDLQAGLDCCCLALQLPGLWS
LLSSPEMVTHACSLIHCVRFILEALVVQPGDQLLSPERRTNTPQAAREDEVDANTQNPQY
VTAACGMVAEMVEALPLVLALGHKRNSSAPAFLTPVLKNIVISLARLPLVNSYTRVPPLV
WKLGWSPKPGGDFGTVFPEIPVEFLQEKEVFKEFIYRINTLGWTSRTQFEETWATLLGVL
VTQPLVMEQEESPPEEDTERTQIHVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRNKP
LKALGTRFGRKLSIIRGIVEQEIQAMVSKRENIATHHLYQAWDPIPSLSPATTGALTSHD
KVLLQVNPERELGNTSYNLGQVSIRSVWLGSSVTPLREEEWAEEEEAPAPSSPPTSPVSA
RKHRAGVDIHSCSQFLLELYSRWILPSSSARRTPVILISEVVRSLLVVSDLFTERSQFET
MYLTLTELRRVHPSEDEILQQYLVPATCKAAAVLGMDKAVAEPVSRLLESTLRSGHLPSR
IGALHGVLYVLECDLLDDTAKQLIPVISDYLLSNLKGTAHCVNIHSQQHVLVMCATAFYL
IENYPLDVGTEFSASIIQMCGVMLSGSEESTPSIVYHCVLRGLERLLLSEQLSRLDAESL
VKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKISPGRTSDPSPAAPDSESVIVAMERVS
VLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYQV
FQTLHSTGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSASTSPWVSAILPHVVSR
MGKLEHVDVHLFCLVAADFYRHQIEEELDRRAFQSVFEVVAAPGNPYHRLLACLRNVHKV
TTC
NT seq
9372 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggaaaagctgatgaaggccttcgagtccctcaagtccttccagcagcag
cagcagcaacagcagcagccgccgccgccgccgccgcctcagcctcctcagccgccgccg
caggcgcaaccgccgcctcagccgcagtcgccgccgcccccgcccccgccgccgccgccc
ggaccggccgtggccgaggagccgctgcaccgaccaaagaaagaactctcagccaccaag
aaagaccgtgtgaatcattgtctgacaatatgtgaaaacatagtggcacagtctctcaga
aattctccagaatttcagaaacttctgggcattgctatggaactttttctgctgtgcagt
gatgacgcagagtcagatgtcaggatggtggctgacgagtgcctcaacaaagtcataaaa
gctttgatggattctaatcttccgaggttacagttggaactctataaggaaattaaaaag
aacggcgctcctcggagcctgcgtgctgccctgtggaggtttgccgagctggctcacctc
gttcggcctcagaaatgcaggccttacttggtaaaccttttgccttgtctgacgcgcaca
agcaagagacccgaggagtctgtccaggagaccttggctgcagctgtccctaagattatg
gcttcttttggcaattttgcaaacgacaatgaaattaaggttctgttaaaggctttcata
gcgaatctgaagtgcagctctcctaccgtgcggcggacggcggccggctcggcggtgagc
atctgccagcactccaggaggacgcagtacttttacagctggctgctcagtgtgctctta
ggtttgctggttcccgtggaggaggaacgctccgcccttctgattctcggagtgctgctc
acattgaggtatttggtgcccttgctgcagcagcaggtcaaggacacgagcctgaaaggc
agctttggggtgacgcggaaagagatggaggtctccccctcgacggagcagctcgtccag
gtgtacgaactgaccttgcattatactcagcaccaagaccacaatgttgtgactggcgca
ctggaactcctgcagcagctcctcagaacccctccacctgagctcctgcgggtgctgacc
acggcgggcggcatcgggcagctcactgccgctaaggatgagcccggttgccgaagtcgt
agcggaagtatcgtggagcttatagctggagggggttcttcatgcagccctgtcctttca
aggaaacaaaaagggaaagtgctctttggagaagcagcagccttggaggatgactctgag
tcaaggtcagacggcagcagccccaccttttcagcctcagtcaagggtgagattggtggt
gagctggctgcctcttctggggtctccactcctggctcagctgccgactctgtgggtcac
gacatcatcactgagcagccccggtcacagcacacacttcagacggactcggtggatctg
accggctgtgacttgacgagtggtgccactgacggggacgaggaggacatcttgagccac
agctccagccagattagcgccgtcccgtctgaccctgccatggacctgaacgatgggacc
caggcctcctctcccatcagtgacagctcccagaccaccaccgaggggcccgattcagcc
gtgaccccttccgacagttctgaaattgtattagatggtgccgacagccagtacccaggg
atgcaagtggggcagccccaggacgaggacgaggacgctgctgtggttcttcctgatgaa
gacgcggaggctttcagaaactcttccatcgcccttcaacaagcacatttgttgcaaagc
atgggccacagcaggcagccctccgacagcagtatagataaatttgtctcaagagatgaa
gctgctgagccaggagatccagaaaacaagccctgccggatcaaaggcgacattggccag
tccagtgatgaagattctgctcctcttgtccattgtgtccgccttctgtccgcttcattt
ttgctaactggggaaaaacacgccttggttccggatagggatgtgagggtcagcgtgaag
gcactggcgctcagctgtgttggagctgctgtggcccttcaccctgaatctttcttcggc
agactttacagagcaccgcttgacaccatggaataccctgaggagcagtacgtgtcagac
atcttgaactacatcgaccatggggacccacaggttagaggagccacagctatcctctgt
gggacccttgtctcctccatcctcagcaggtcccgcttccacgtgggagactggatgggc
accgtcagaaccctgacaggaaatacattttctctggcggactgcattcccctgctgcag
aaaactttgaaggacgaatcttctgttacttgcaagttggcttgtacagctgtgaggctc
tgcgtcatgagtctctgcagcagcagctacagcgagtgggggctgcagctcctcaccgac
atgctggccctgcggagcagctcctactggctggtgaggacggagcttctggagaccgtg
gcagagatcgacttcaggttggtgagctttttggaggcaaaagcagaaaacctacacaga
agggcccatcattatacagggcttttaaaactgcaagaacgagtgctcaataacattgtc
atctatttgcttggggatgaagaccccagggtgcgccacgttgctgcagcttcgttaacg
aggcttgtcccgaagctgttctataagtgcgaccaaggacaggctgacgcagtcgtggcc
atggcgagaggtcaaagcagcgttcacctgaagcctctcatgcacgaggcgcagcctccg
tctcacttctccgccagcaccataaccagaatatatagaggctataacctactaccaagc
ataacagacgtcactatggaaaataacctttcgagagtcattgcagcagtttctcatgag
ctaatcacatcaaccacgagggcgctcacatttggatgctgtgaagctctgtgtcttctt
tcaactgcctttccagtttgcatttggagtttaggttggcattgtggagtgcccccactg
agcgcctctgatgagtctagaaagagctgtactgtgggcatggtcacgatgatcctgacc
ctgctttcatcagcctggttcccactggatctctcagcccatcaagatgctttgatttta
gccgggaacttgcttgcagccagtgcccccagatctctgaggagttcgtgggcctccgaa
gaagaggccagccccgcagccaccaagcaggaagaggtgtggccggctctgggtgaccgg
accctggtgcccatggtggagcagctcttctcccacctgctgaaggtggtcaacatctgt
gcacatgtcctggatgatgtggctcctggaccagcaataaaggcagccttgccatctcta
acaaacccgccttctctgagtccaatccgacggaagggaaaagagaaggaacccggagag
caggtgtctgtacccgtgagtcccaagaaaggcggtgaggccagtccagcctctcgacca
tctgaaacctcagggcctgttgcagcaaccaagtcctcgtcactggggagtttctatcac
cttccttcttaccttaaattgcacgatgtcctgaaagctacacacgcaaactacaaggtc
accttggatcttcagagcaacaccgaaaagtttggggcttttctgcgctctgccttggac
gttctctctcagattctagagctggcaacgctgcaggacatcgggaagtgtgtcgaagag
atcctggggtacctgaaatcctgcttcagtcgagaaccagtgatggcaactgtttgtgtc
cagcagctgttgaagactctctttgggacaaacttggcctcccagtttgatggcttatct
tccaaccccagcaagtctcaaggccgtgctcagcgccttggctcttccagcgtgaggccg
ggcttgtaccactactgcttcatggctccgtacacccacttcacccaggccttagccgac
gccagcctaaggaacatggtgcaggcagaacaggaccacgacacctcagggtggtttgac
gtactccagaaagtgtctacccaattgaagacaaacctcaccagcgtcgccaagaaccgc
gcggacaagaatgctattcataatcacattcgtttatttgagcctcttgttataaaagct
ttaaaacagtacacgacaacaacctctgtgcagttacagaagcaggttttggatttgctg
gcgcagctggttcagttacgggttaactactgccttctggattcggatcaggtgtttatt
ggatttgtgctgaagcagtttgaatacattgaagtaggccagttcagggaatcagaggca
attattccaaacatctttttcttcctggtattactgtcttatgaacgctatcattcaaaa
cagatcattggaattcctaaaatcatccagctctgtgacggcatcatggccagtgggagg
aaagctgtgacacacgccataccagccctgcagcctatagtccacgacctgttcgtttta
agaggaaccaataaagctgatgcaggaaaagagcttgaaacccagaaggaggtggtggtg
tccatgttactgaggctcatccagtaccatcaggtgttggagatgttcatcctggtcctg
cagcagtgccacaaggagagcgaggacaagtggaagcggctgtctcggcaggtagccgac
atcatcctcccgatgttggccaggcaacagatgcacattgattctcacgaagcacttgga
gtgttaaatacgttatttgagattttggccccttcctccctccgtcccgtggacatgctt
ttacggagtatgttcgtcaccccagataccctggcatctgtgagcactgctcagctgtgg
atagccgggatcctagccattctgagggttctgatttcccagtcaactgaagacattgtg
ctttcccgcattcaggagctttccttctctccgtatttactctgctgtccgataattaat
aggttaagagatgggggcagtaattcagtactggaagaacacagtgaagggagacaaacg
aaggatttgccagaagaaacattttccaggtttctgctacaactggttggcatcctttta
gaggacattgttacaaaacagctaagagtggaaatgagtgaacagcagcatactttctac
tgccaagaactaggcacgctgctcatgtgtctgatccacatcttcaagtctgggacattc
cggagaatcactgcggctgcctcgagactcttgacggacggcgcggatggcagcttctac
ggcctggagagcttgaacgcctgggtgcgctccatggtccccacccacccggccctcgtg
ctgctctggtgtcagatcctgctgctcgtcagccacaccgactaccgctggtgggcagag
gtgcagcagacccccagaagacgcagtctgtccagcacgaagtcacttagtccccagatg
tctggagaggacgaggattctgatgtggcttccaaactgggaatgtgcaatagagaaata
gtacgaagaggagctctcattctcttctgcgattatgtctgccagaacctgcacgattca
gagcacttaacgtggctcatcgtcaaccacattcaggacctgatcagcctgtcccacgag
cctcctgtgcaggacttcattagtgctgtccatcggaattccgcggccagcggccttttc
atccaggcaattcagtctcgttgtgaaaatctttcaactcccaccacgctgaagaaaacc
ctccagtgcctggaagggatccacctgagccagtcgggcgccgtgctgacgctgtacgtg
gacaagcttttgtgtactccgttccgtgtgctggctcacatggtcgacacccttgcttgt
cgccgggtggagatgcttctggctgcaaatttacagaacagcacggcccagctgccggcg
gaagagctaagcaggatccaggagcacctgcagagcagcgggttagcgcagagacaccaa
aggctctactccctgctggacaggcttcgtctcaccactgcaccggcatcgcgtggcccc
gctcctctggtcacgccccacccgctggacggggacgggcccctggcactggagacagtg
agtcctgacaaagactggtacgtacgtctggttaaatcccagtgctggacgcggtcagac
tctgcactgctggaaggggcagagctggtgaatcggatccctccgggtgacttgaacgcg
ttcatgatgaactcggagttcaacctgaacctgctagccccgtgcttgggcctgggcgtg
cgtgagatctgtgcgggccggaagagccccctttttgcagcagctcgcacggcgactctg
gaccgcgtggccagtgtggttcagcagctgcccgctgtccaccacgtcttccagccgttc
ctgccggcagagcccaccgcctactggagcaagttggacgatctctttggggatgccgtg
ctgtatcggaccctgaccactctggcccgggccctcgcccagtacctgctggtgttctcc
agactgcccggccacttgcaccttcctcctgagaaggagagggacaccgtgaagtttgtg
gtcatgaccctcgaggccctgtcgtggcatttgatccatgagcagatccctctgagtctg
gacctgcaggcgggcctggactgctgctgcctggctctgcagctgcccggcctctggagc
ctgctctcctcccctgagatggtgacccatgcctgctctctcatccactgtgtgcggttc
atcctagaagcccttgtggtgcagcctggggaccagcttcttagtccagaaagaaggacg
aacaccccacaggccgccagagaggacgaagtggatgcaaacacacagaaccctcagtat
gtcactgcagcctgtgggatggtggccgagatggtggaggcactgccgttggtgctggcc
ttgggtcataaaaggaacagcagcgccccggcgttcctcacgccggtgctcaagaacatc
gtcatcagcctggcccgcttgcccctcgtcaacagctacacgcgcgtcccgcccctggtg
tggaagctcggatggtcacccaaaccaggaggggattttggcaccgtgttccccgagatc
cctgtggagttcctccaggaaaaggaagtcttcaaagagttcatctaccgcatcaatacg
ctagggtggaccagccgtacccagtttgaggaaacgtgggccaccctcctcggtgtcctg
gtgactcagcccctcgtgatggagcaagaggagagcccccccgaagaagacacggagagg
acccagatccacgtcctggccgtgcaggccatcacctccctggtgctgagcgccatgact
gtgcctgttgccggcaacccagccgtgagctgcctggagcagcagccccggaacaagccc
ctgaaagctctcggcaccaggtttgggaggaagttgagcatcatcagaggaatcgtagag
caggaaattcaagcgatggtttcaaagagggagaatatcgccacccatcatctgtaccag
gcgtgggaccccatcccttctctgtctccagctactacaggtgccctcaccagccacgac
aaggtcctgctgcaggtcaaccccgagcgggagctggggaacacgagctacaacctcggc
caggtgtccatccgctccgtgtggctggggagcagcgtcacgcccctgagagaggaggag
tgggccgaggaggaggaggcccccgcgccgtcgtccccgcccacgtctccagtcagcgcc
aggaaacaccgggctggagtcgacatccattcctgttcgcagtttttgctcgagttgtac
agtcgctggatcctgccgtcaagttcggccaggaggacccccgtcatcctgatcagcgag
gtggtgcggtcgcttctcgtggtctcagacctgtttacggagcgcagccagtttgagacg
atgtacctgacgctgacagagctgcggagggtgcacccttcggaagacgagattctccaa
cagtacctggtacccgccacctgcaaggcggccgccgtcctcgggatggacaaggccgtg
gcagagccggtcagccggctgctggagagcacgctcaggagcggccatctgcccagcagg
attggagccctgcatggcgtcctctacgtgctggagtgcgacctcctagacgacaccgca
aagcagctcatcccggtcatcagcgactatctcctctccaacctcaaaggcacagcccac
tgcgtgaacatccacagccagcagcacgtgctggtgatgtgtgccacggccttctacctg
attgagaactaccctctggacgtcgggacggagttctccgcatccatcatacagatgtgt
ggggtgatgctgtctggaagcgaggagtccaccccgtccatcgtttaccactgtgtcctg
aggggcctggagcgcctcctgctctccgagcagctctcccggctggacgcggagtccctg
gtcaagctgagcgtggacagagtgaacgtgcacagcccgcaccgcgccatggcggccctg
ggcctgatgctcacctgtatgtacacaggaaaagagaaaatcagtccaggcagaacctca
gaccccagccctgccgcccctgacagcgagtcagtgatcgtggccatggagcgtgtgtct
gttctttttgacaggatcaggaaggggtttccctgtgaagccagagtggtggcgcggatc
ctcccccagtttctagatgacttcttcccgccccaggacgtcatgaacaaggtcattgga
gagtttctgtccaaccagcaaccgtacccgcagttcatggccaccgtagtgtaccaggtg
ttccagactctgcacagcacagggcagtcgtccatggtccgggactgggtcatgctgtcc
ctctccaacttcacgcagaggactccggttgccatggccatgtggagcctctcctgcttc
tttgtcagcgcttccactagcccgtgggtttcggccatccttccccacgtcgtgagcagg
atgggcaagctggagcacgtggacgtgcacctcttctgcctggtggccgcggacttctac
agacaccagatagaggaggagctcgaccgcagggccttccagtctgtgttcgaggtggtc
gcagcgccaggaaacccgtatcaccgcctgctggcttgtttgcggaacgtccacaaggtc
accacgtgctga
DBGET
integrated database retrieval system
