Orcinus orca (killer whale): 101289878
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Entry
101289878 CDS
T05247
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03020
RNA polymerase
oor03420
Nucleotide excision repair
oor05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101289878 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
101289878 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
101289878 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oor03021
]
101289878 (POLR2A)
03400 DNA repair and recombination proteins [BR:
oor03400
]
101289878 (POLR2A)
Enzymes [BR:
oor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101289878 (POLR2A)
Transcription machinery [BR:
oor03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101289878 (POLR2A)
DNA repair and recombination proteins [BR:
oor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101289878 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
101289878
NCBI-ProteinID:
XP_004266962
LinkDB
All DBs
Position
19:11918232..11938597
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDVVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcatgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagttctcagtccggatgaactgaaacgaatgtctgtgacagagggcggc
atcaaatacccagagaccaccgagggaggccgccccaagcttggggggctgatggatccg
aggcagggggtgattgagaggactggccgctgccaaacctgtgcaggaaacatgacagag
tgtcctggccactttggccacattgagctggccaaacctgtgttccatgtcggcttcctg
gtcaagacaatgaaagttttgcgctgcgtctgcttcttctgctccaaattgcttgtggac
tctaacaacccaaagatcaaggacattttggctaagtccaaggggcagcccaagaagcgg
cttacacacgtctatgacctctgcaagggcaaaaacatctgcgagggcggggaggagatg
gacaacaagttcggtgtggagcagcctgagggcgatgaggatttgaccaaagaaaagggc
cacggcggctgtgggcggtaccagccccggatccggcgctccggcctggagctgtacgca
gagtggaagcacgtcaacgaggactctcaggagaagaagatcctgctgagtcctgagcgg
gtgcacgagatcttcaaacgcatctcagatgaggagtgcttcgtcctgggcatggagcct
cgctacgcccggcccgagtggatgattgtcactgtgctgcctgtgcccccgctctccgtg
cggcctgctgttgtgatgcagggctctgcccgcaaccaggatgacctgacacacaaactg
gccgacatcgtgaagatcaacaatcagcttcggcgcaacgagcagaacggcgcggccgcg
catgtcatcgctgaggacgtgaagctcctccagttccacgtggccaccatggtggacaac
gagctgcctggcttgcctcgtgccatgcagaagtctgggcgtcccctcaagtccctgaag
cagcggttgaagggcaaggaaggccgtgtgcgcgggaacctgatgggcaagcgggtggac
ttctcggcccgcactgtcatcacccccgaccccaacctctccattgaccaggttggcgtg
cctcgctccattgccgccaatatgacctttgcggagatcgtcacccccttcaacattgac
agacttcaggaactagtgcgcagggggaacagccagtacccaggggccaagtacatcatc
cgggacaacggtgatcgcattgacctgcgtttccaccccaaacccagtgaccttcacctg
cagactggctataaggtggaacggcacatgtgcgatggggacattgttatcttcaaccgg
cagccaactttgcacaaaatgtccatgatgggacatcgggttcgcatcctgccctggtct
acttttcgcttgaatctgagtgtgacaactccatacaatgccgattttgatggggatgag
atgaacttgcacctgccacagtccctggagacgcgggctgagatccaggagctcgccatg
gtgccacgcatgatcgtcaccccccagagcaatcgcccagttatgggcattgtgcaggac
acgctgaccgcagtgcgcaaattcaccaagagggacgttttcctggagcggggcgaggtg
atgaacctcctgatgttcctgtccacgtgggacggcaaggtcccacagccagccatcctg
aagccccggcccctgtggacagggaagcagatcttctccctcatcatacccggccacatc
aactgtatccgcactcacagcacccatcccgatgatgaggatagtggtccttacaagcac
atctctcctggggacaccaaggtggtggtggagaacggggagctgatcatgggcatcctg
tgtaaaaagtctttgggcacatcagctggctccctggtccacatctcttacctagagatg
ggtcatgacatcacccgcctcttctactccaacattcagactgtcattaacaactggctc
ctcattgagggtcataccattggcattggggactccattgctgattctaagacttaccaa
gacattcagaacactattaagaaggccaagcaggatgtaatagaggtcattgagaaggcg
cataacaacgagctggagcccaccccggggaacactttgcggcagacctttgagaaccag
gtgaaccgcattctcaacgatgcccgagacaagactggctcctctgcccagaaatccctg
tctgaatacaacaactttaagtcaatggtggtgtccggggctaaaggttccaagatcaac
atctcccaggtcattgctgtcgtcgggcagcagaacgtggagggcaagcggatcccgttt
gggttcaagcaccggactctgcctcacttcatcaaagatgactatgggcctgagagccgt
ggcttcgtggagaactcctacctggccggcctcacgcccaccgagttcttcttccatgcc
atggggggtcgtgaggggctcatcgacacagctgtcaagactgctgagactggatacatc
cagcggcggctgatcaaatccatggagtcggtgatggtgaagtatgacgccaccgtgcga
aactccatcaatcaggtggtacagctgcgctatggtgaagatggcctggcgggcgagagc
gttgagttccagaacctggctaccctcaagccttccaacaaggctttcgagaagaagttc
cgctttgattataccaatgagagggccctgcggcgcaccctgcaggaggatgtggtgaag
gacgtgctgagcaatgcacacattcagaacgagctggagcgagaatttgagcggatgcgt
gaggacagggaggtgctcagggtcatcttcccaactggtgacagcaaggttgtcctcccc
tgtaacctgctgcgcatgatctggaacgctcagaagatcttccacatcaaccctcgcctt
ccctctgacctgcaccccatcaaggtggtagagggtgtcaaggagctgagcaagaagctg
gtgattgtgaatggggacgacccactgagccggcaggcccaggagaacgccaccctgctc
ttcaacatccacctgcggtccacgctgtgctcccgccgcatggccgaggagtttcggctc
agcggagaggccttcgactggctgctcggagagatcgagtccaagttcaaccaagccatt
gcccatcctggggaaatggtgggagctctggctgcacagtcccttggagaacctgccacc
cagatgactctgaacaccttccactatgctggtgtgtccgccaagaatgtgacactgggt
gtgccccgacttaaggagctcatcaacatttccaagaagccaaagaccccctcacttact
gtcttcctgctgggccagtctgctcgagatgctgagagagccaaggatattctgtgccgc
ctggaacatacaacgctgaggaaggtgactgccaacacggccatctactatgaccccaac
ccccagagcacggtggtggcagaggatcaggagtgggtgaatgtctactatgagatgcct
gactttgatgtggcccgaatctccccctggcttttgcgggtggagctggaccggaagcac
atgactgatcggaagctgaccatggagcagattgccgagaagatcaatgctggtttcggt
gatgacttgaactgcatctttaacgatgataatgcagagaagctggtgctccgtatccgc
atcatgaacagtgatgaaaacaagatgcaagaggaagaagaggtggtggacaagatggat
gacgacgtcttcctgcgctgcatcgagtccaacatgctgacagatatgaccctgcagggc
atcgagcagatcagcaaggtgtacatgcacttgccgcagacggacaacaagaagaagatc
atcatcacagaggacggggagttcaaggccttgcaggagtggatcctggagacggatggc
gtgagcctcatgcgggtgctgagcgagaaggacgtggaccctgtgcgcaccacgtccaat
gacatcgtggagatcttcacggtgctgggcatagaagccgtgcggaaggccctggagcgg
gagctgtaccacgtcatctccttcgatggttcctacgtcaattaccggcacttggctctc
ctgtgtgataccatgacctgtcgtggccacttgatggccatcacccgacacggagtcaac
cgccaggataccggacctctcatgaagtgctcctttgaggaaacggtggatgtgcttatg
gaagcagctgcacatggagagagtgaccccatgaagggggtgtctgagaacatcatgctg
ggccagctggctccagccggcactggctgttttgacctcctgctcgatgcagagaagtgc
aagtatggcatggagatccccaccaacatccccggcttgggggctgccggacccaccggc
atgttcttcggctcggcccccagtcccatgggaggaatttctccagccatgacaccctgg
aaccagggcgcaaccccagcctacggtgcctggtcccccagtgttgggagcgggatgacc
ccgggggcagcaggcttctctcccagtgctgcttcagatgccagtggcttcagccctggt
tactccccggcctggtctcccacgccgggttccccaggctcccctggcccctcaagcccg
tatattccctcaccagggggtgccatgtctcccagctactccccgacgtcgcctgcctac
gagccccgctcccctgggggctacacgccccagagtccctcttactcccccacttcaccc
tcctactcccctacgtctccatcctattctccaaccagccccaactacagccccacgtcg
cccagctactccccgacctcgcccagctactccccgacctcacccagctactccccgacc
tcacccagctactccccgacctcgcctagctactccccgacctcacccagctactcgccc
acttccccaagctactcgcccacatcacccagttactcgccaacctctcccagctattcg
cccacctctcccagttactcgccaacttcacccagctactcgcccacctcacctagctac
tctccgacatctccaagctattcaccgacgtcaccaagctactcaccaacttccccaagt
tactcacccaccagccctaactattctccaaccagtcccaattacacaccgacgtcaccc
agctatagcccaacatcccccagctactcacctactagtcccaactacacaccaacgagc
cccaactacagcccaacctctccaagctactctccgacctcacccagctactccccgacc
tcaccaagctactccccttcgagtccacgatacacaccacagtctcccacctataccccg
agctcacccagctacagccccagctcgcccagctacagcccgacttcaccgaagtacacc
ccaaccagtccttcctacagccccagctcaccggagtacaccccgacctctcccaagtac
tcacctaccagcccgaaatattcgcccacctcccccaagtactctccgaccagccccacc
tactcgcccaccactccaaaatactcgccgacgtctcctacttactcaccaacctctccg
gtctacaccccaacctcccccaagtactcacccaccagccccacctactcgcccacctcc
cccaagtactcacccaccagccccacctactcgcccacttcccccaaaggctcgacctac
tcgcccacctcccctggctactcgcccaccagccccacctatagcctcaccagcccagcc
atcagtcccgatgacagtgatgaggagaactga
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integrated database retrieval system
