Orcinus orca (killer whale): 117196053
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Entry
117196053 CDS
T05247
Symbol
SOX2
Name
(RefSeq) transcription factor SOX-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
oor
Orcinus orca (killer whale)
Pathway
oor04390
Hippo signaling pathway
oor04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
117196053 (SOX2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
117196053 (SOX2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oor03000
]
117196053 (SOX2)
Transcription factors [BR:
oor03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117196053 (SOX2)
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
117196053
NCBI-ProteinID:
XP_049566612
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Position
5:63917396..64038217
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AA seq
326 aa
AA seq
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MYNMMETELKPPGPQQTSGGGGGGGGGGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVW
SRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYR
PRRKTKTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSY
SMMQDQLGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQG
TPGMALGSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSR
LHMSQHYQSGPVPGTAINGTLPLSHM
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacatgatggagacggagctgaagccgccgggcccgcagcaaacttcggggggc
ggcggcggcggcggcggcggcggcggcggcggcggcaactccaccgcggcggcggcgggc
ggcaaccagaagaacagcccggaccgcgtcaagcggcccatgaacgccttcatggtgtgg
tcccgcgggcagcggcgcaagatggcccaagagaaccccaagatgcacaactcggagatc
agcaagcgcctgggcgccgagtggaaacttttgtcggagacggagaagcggccgttcatc
gacgaggccaagcggctgcgagcgctgcacatgaaggaacacccggattataaataccgg
ccccggcggaaaaccaagacgctcatgaagaaggataagtacacgctgccgggagggctg
ctcgccccgggcggcaacagcatggcgagcggggtcggggtgggcgccggcctcggcgcg
ggcgtgaaccagcgcatggacagctacgcgcacatgaacggctggagcaacggcagctac
agcatgatgcaggaccagctgggctacccgcagcacccgggcctcaacgcgcacggcgcc
gctcagatgcagcccatgcaccgctacgacgtgagcgccctgcagtacaactccatgacc
agctcgcagacctacatgaacggctcgccgacctacagcatgtcctattcgcagcagggc
acccctggcatggctcttggctccatgggctcggtggtcaagtccgaggccagctccagc
ccccccgtggttacctcttcttcccactccagggcgccctgccaggccggggacctccgg
gacatgatcagcatgtacctccccggcgccgaggtgccggagcccgccgcccccagcaga
cttcacatgtcgcagcactaccagagcggcccggtgcccggcacggccattaacggcaca
ctgcccctctcgcacatgtga
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