Oratosquilla oratoria (Japanese mantis shrimp): 143020779
Help
Entry
143020779 CDS
T11268
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase Mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
oot Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143020779 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oot03019
]
143020779 (Mtr4)
03041 Spliceosome [BR:
oot03041
]
143020779 (Mtr4)
03009 Ribosome biogenesis [BR:
oot03009
]
143020779 (Mtr4)
03016 Transfer RNA biogenesis [BR:
oot03016
]
143020779 (Mtr4)
Enzymes [BR:
oot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143020779 (Mtr4)
Messenger RNA biogenesis [BR:
oot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
143020779 (Mtr4)
Spliceosome [BR:
oot03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
143020779 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
143020779 (Mtr4)
Ribosome biogenesis [BR:
oot03009
]
Eukaryotic type
Pre-60S particles
Helicases
143020779 (Mtr4)
Transfer RNA biogenesis [BR:
oot03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
143020779 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Helicase_dom4_arc
nSTAND3
Motif
Other DBs
NCBI-GeneID:
143020779
NCBI-ProteinID:
XP_076033636
LinkDB
All DBs
Position
40:complement(38233285..38258561)
Genome browser
AA seq
1021 aa
AA seq
DB search
MACFDGEDLFDFVEEESDNLAALPDIGNEDNDDNKVAEEELRKLMCKRPADEEDVKVDIK
KPKSEVEAIQCELRMTEELPRIEVHTIETLESCTHEVAIAPGATFRPLKPPTREPYQTYP
FILDPFQKEAILCIDNNESVLVSAHTSAGKTVVAEYAIAMCLHNKQRVIYTTPIKALSNQ
KYRDFSDEFTDVGLMTGDVTINPNASCLIMTTEILRCMLYRGSEVTREVGWVIFDEIHYM
RDKERGYVWEESIILLPTSVRFVFLSATIPNASQFAQWISYLHHQPTHVVYTDYRPTPLQ
HYIFPGGAEGIYLVVDEVGRFREDNFNTAMTILQNAPETQGPRGKKGGVRDGSDCFKLVK
MIMERNFAPVIIFSFSKKDCEAYALQMAKLDFNMAEEKQLVCEVFNNAMSVLSDEDRELP
QVQSVLPLLKRGIGIHHGGLLPILKETIEILFGEGLLKALFATETFAMGLNMPARTVLFT
SVRKFDGKDFRWLTSGEYIQMSGRAGRRGKDDKGIVIMMTDEKLNESVAKNLVQGKADPI
NSAFHLTYNMVLNLLRVEQINPEYILERSFFQFQNYSSIPALCDRVRDAEMSLAKLKVPR
ESDVESYYKIRMSIDNLRQERHTFITRPVYIFPFLQPGRLVQVKNNNDYFGWGVVLSYKK
QDEKENPRGGETRVTVDVVLTVSKETANNKITAELKPPKLGEDSEPAVVPIDVKLIQEIS
AVRLKLPADLKPLDQRMMVMKMVQEAQNRVPESQFLLDPVKNMKINDETFLEVVNKLEKF
QARLNSHKLHNDPDKDRLYALYQKKVEMKKELGNAETELKRAKSVLQLDELKYHKRVLRR
LGYATSQEVIERKGRVACELSAADELLITEMLFNGLFNDLSAAQTCALLSTFVCDEKSSD
MPKLGEELSGPLRQMQDMARRIARVSHECKLEINEDEYVEQFKPFLMDVVYDWCSGSSFM
EICKKTDIFEGSIIRAMRRLEELLRQMIQAAKAIGIDLENKFAEGVKLLKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggcttgtttcgacggagaagatctgttcgactttgtcgaagaggagagtgataattta
gctgccctacctgacataggaaatgaggataatgatgacaataaagtggccgaagaagaa
ctacggaaattgatgtgcaaaagacctgcagatgaagaggatgtcaaagtggatattaag
aaacccaagtcagaagttgaagctattcagtgtgaacttagaatgacagaggagttgccc
agaattgaagttcacacgatagagacactcgagtcgtgcacacacgaagttgccatcgca
ccaggcgcaacctttaggccccttaaacctccgaccagagagccgtatcaaacgtaccca
ttcatcttggatccgttccagaaagaagcaattttgtgtatagataataacgagtccgtg
ttggtttcagctcatacgtcagcaggaaagaccgtcgttgccgagtatgccattgcgatg
tgtttacataacaaacaaagagttatctatacaactcccattaaggcattgagtaaccag
aaatacagagattttagtgacgagttcactgacgtcggcttgatgacaggagacgtaaca
atcaatccaaatgcttcctgccttataatgacaacggaaatcctccggtgcatgctttat
cgtgggtcagaagtcaccagagaagtgggatgggttatttttgatgaaattcattacatg
agagacaaagaaagaggttatgtttgggaagagagtataattctactgccaacttcagtc
cgcttcgtgttcctttcggctaccattccaaatgcaagtcagtttgcccagtggatatca
tacttgcaccatcaaccaactcatgtggtgtacaccgactaccgtcccactccgctacag
cactacattttcccagggggtgcagagggtatatacctcgttgtggacgaggttggacgg
tttcgggaggataacttcaacactgcgatgaccatccttcagaatgctccagaaacgcaa
ggacctcggggaaagaaaggcggtgtgcgagatggctcggattgcttcaagttggtcaag
atgataatggagcgtaattttgcaccagtcatcatcttcagcttctccaaaaaagactgc
gaagcttacgcacttcagatggctaagctggatttcaacatggcagaagaaaagcagttg
gtgtgtgaagtgttcaacaatgccatgtcggtattgtccgatgaagacagggagttgcct
caagttcagagtgtacttccactcctgaagaggggcattggcatacatcatggaggactg
ttacccattctcaaggaaaccattgagattctttttggggaagggcttctgaaagctctc
tttgccacagaaacatttgccatggggctcaacatgcctgcccgaacggtacttttcaca
agtgttcgcaaatttgatggaaaagacttcagatggttaacatctggagaatacattcag
atgtcagggcgtgctggtagaagaggcaaagatgacaaaggtattgtaattatgatgacg
gatgaaaaactcaatgaatctgtagcaaagaatttagttcagggcaaggcagatcccatc
aactctgctttccatttgacctacaacatggtgctcaacttgctcagagttgaacaaatc
aatccagagtacattctggaacgatcattcttccagttccagaactattcttccattcca
gccttatgtgacagagttagagatgcagaaatgagtctggcaaagttgaaagtaccaaga
gagtccgatgtggagagctactacaaaatcaggatgagcattgacaaccttcgtcaggag
cggcacacctttatcacacgtcctgtgtacatcttcccattccttcagcctggcagatta
gtccaggtcaaaaacaataatgactattttggatggggcgttgtgttgagttacaagaag
caagacgagaaggaaaatccaagaggtggggagaccagggtcactgtcgatgttgtgttg
acagtctccaaggaaactgccaacaataagatcactgcagagctcaaacctccaaaattg
ggagaggatagcgaacctgctgtggtacccatcgacgtcaaactcattcaagaaatctcc
gctgtgaggctgaaactcccagctgatctcaagcctttggaccagcgaatgatggtcatg
aagatggtacaggaagcacaaaacagagtaccagagagtcagtttctgctggatcctgta
aagaacatgaagattaacgatgaaacattcctggaggttgtaaataaattggaaaagttt
caggctcgactcaattctcataaactgcacaacgatccagataaagatcggctttatgca
ctctatcagaagaaggtggagatgaagaaggagctgggaaatgcggaaactgaactgaag
agggcgaaaagtgtcttgcagttagacgagttgaagtaccacaagcgagtcttaagacgt
ctcggttatgcaacatcacaggaagtcattgagcgcaaaggaagggttgcttgtgaactc
tcggctgcagatgaacttcttattacagaaatgttgttcaatgggctgttcaatgacctg
tcagctgcccagacatgtgctcttctaagcacatttgtatgtgatgaaaagtcttctgac
atgcctaaactcggggaggaactgtcggggccactgcgacaaatgcaggacatggcgcgc
cgcattgcacgggtcagccacgagtgcaagctagagattaatgaggatgagtatgtagaa
cagttcaagcccttcctaatggatgttgtttatgattggtgtagtggttcatctttcatg
gaaatttgcaagaaaactgatatttttgaaggaagcatcatcagggccatgcgacgtttg
gaggagctgctgcggcaaatgattcaggctgccaaagccataggcattgatctcgaaaac
aaatttgctgaaggtgtaaagttgctcaaacgtgatattgtttttgctgcgagtttatac
ctttag
DBGET
integrated database retrieval system
