KEGG   Oratosquilla oratoria (Japanese mantis shrimp): 143020911
Entry
143020911         CDS       T11268                                 
Symbol
Rbcn-3B
Name
(RefSeq) WD repeat-containing protein Rbcn-3B isoform X1
  KO
K24738  rabconnectin-3b
Organism
oot  Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot04142  Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:oot00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    143020911 (Rbcn-3B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:oot04131]
    143020911 (Rbcn-3B)
Membrane trafficking [BR:oot04131]
 Endosome - Lysosome transport
  Acidification regulators
   Rabconnectin-3 complex
    143020911 (Rbcn-3B)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd EIF3I ANAPC4_WD40 ASA1 WD40_MABP1-WDR62_2nd Beta-prop_Aladin Beta-prop_NOL10_N WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_VPS8 PAC11 Beta-prop_NWD2_C DSE1_N Beta-prop_WDR35_TULP_N TRM82_WD Beta-prop_ACSF4 Tricorn_2nd Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 143020911
NCBI-ProteinID: XP_076033937
LinkDB
Position
41:5638758..5711242
AA seq 1523 aa
MGSLNLVVPVVLWGREAPTHDICSVLLTRDVKTVVTGTRDGQICIWDFDPPSLKLTARCL
LVGHTSSVQCLAQASLTPGSQYIISSSENGEMCTWDIRDGRCLEVFKSANVHSSMIAYQM
LNVPDSRLFCVGNYPEILVYDPMTLEVLFSLSARIEPDWISAVHILRPPRRNDEVVLGLT
TSGWVKVWTVSEREVRPGEAIYEHESKMIRSLNALSMVCCDYNQRTVLIVTQNDWQIYDA
GDFSQLCKVSVPTGERWMGGDFLTADRVILWTDFGQAYIYKLPTNCIVESRAFHNKQHEG
DQAFMYGIVKPQHLEHLVNAPAWQYIAIPVSSGAEKLLLRGDCEGQVMLWRLADVTDHQL
VQIQQVQPFRCINFAPTVNHSLMKSWLAMNPSPVGVLDQLEGEKNPPRITASLFLPLQGR
LACGREDGSIILVPATETIMLHLLHGKHHHYHNWAQPMVLRGHQGRVNCLLYPHGESNRY
DMAHLVSGGIDFSISVWDMYTGNLVHRFVVQAGPIVQLLVPPPTCTPRIQNCICSVSEDH
SVALMSIKERKLVLLASQHLYPIVTVKWRPQHDFLIVSCQDGSVYIWQMETGHLDRVLQG
VQAEEVISACDEHSQGVSSTDAGLANPAVHLFRGLRHRNLAAIRHAAQRGIQQVLGEQNN
QQDIHDHSKLRTCPLMVQGLRTHKQDANSHVLFFDIEALIVQLLSDEYALMSPGTLEANE
LIQSSQYQRMNVLTHPASPEGAKKIAAISVFEEFFGKVKDKAGEMEKKMKEKDKHDLLGR
AKDKAINMEKTFKDRDKHGILSKVKESAENVQTLIQSKVESVGIRPTSLTPDKEGNDGRV
HISRHLDITAQTLQIGQVLMSLLHSWGLDTSLDTTCENILGLLKPRVPVSFGLLSKSGYM
SLVMPTWHPVPHNQMPPINLPPELEEELPPEMVQLEHLTQVFTSRGHWEISSAMTTHHLL
TLVSLANTLQDMNAATLIPEQERRRKNHMQSSKSSQGNNPQEVEFAQQQVVIKQGWSRLT
ALHTVLLPGQVAQSGSTSFTPPMVEILARRWQDRCQEVREAAQALLKTELSRMGAEGRKV
LVEEWSAHLPSYTDPLPTTVPTYNNHHEAMQSPKPEHNSTKQQNSSSHNNQTVNNVGNGS
HTIVSERPMEPHPHLDEEHEEEEPMDGESHRDVVAQSEGRRKQATAIILLGVIGAYHGQD
SQEGFGLGQLAMQTSKALAYLLLAPVSSKMPGHTPLRRAAMDLIGRGFPVWEPYLDVAKV
LLALLDLCADTDRLAPSMKYGLPLIPEADSCRTASNALTCIAEARPPAFITTMAREVARF
NTLQQNAQSLQMNLHNSVLYRAKTEILRIMDYLIQHKRVFIMDLMVEVTDIVLHCVDPGH
LKSRGLNEVFPAICGFPQVSHCPHTRRIATGAKNGSIAMYELRASKCQMIPAHQEPVTAV
SFSPDGKYLTSYSMMESKLSFWQTSAGMFGLGTSQTKCTKSYSTIPVPEIVRMNPQRLPK
LVWVSNRTVVLMMADGTEHRFNA
NT seq 4572 nt   +upstreamnt  +downstreamnt
atgggttcgctcaacctagtggttccagtagttctctggggccgtgaggctccaactcat
gatatctgctcagttctcttgactcgagatgtcaagactgtagtcacaggaactagggat
ggacagatctgcatttgggattttgatcctccatcactaaagttgacagcccgatgctta
ttagtgggacatacctcaagtgtacagtgtcttgcccaagctagtctcactcctggtagc
cagtacataattagttcttcagaaaatggtgagatgtgtacgtgggacatccgtgatggc
aggtgtcttgaagtttttaaatctgccaatgtccattcatcaatgattgcataccaaatg
ttgaatgttcctgattctcggcttttctgtgtgggcaattatccagagatcttagtatat
gatcctatgactctggaggtgctcttctcactgtctgcacgtattgagccagactggatc
tctgctgttcacattttacgtcctccaagaagaaatgatgaagttgtcctgggcctcaca
acaagtggatgggttaaagtgtggactgtcagtgaacgagaagtacggccaggcgaagca
atatacgaacacgagtcaaaaatgatcagatcactgaatgcgttatccatggtgtgctgt
gactacaatcaaaggacagttctcattgttacacagaatgattggcagatatatgacgca
ggagacttttcacagttgtgtaaagtttcagtacctacaggagaaaggtggatgggtgga
gattttcttacagcagacagagtcatcctttggacagatttcggtcaagcttatatctac
aaactacccacaaattgtatagttgagagtcgtgccttccacaataagcagcatgaaggg
gatcaagcattcatgtatggcattgtaaaaccccaacatcttgagcacctcgtgaatgct
cccgcatggcagtatattgccattcccgttagcagtggggctgaaaagcttcttctcaga
ggagattgtgagggacaggtgatgctatggagactggcagatgtaacagatcaccagctg
gttcaaatacaacaagtccaaccattccgttgtatcaactttgctccaacagttaaccat
tcattaatgaaatcttggttagccatgaacccatccccagttggtgttcttgatcaactt
gagggagagaaaaacccacctaggatcactgcaagtctattcttaccgctacaagggaga
ttagcttgtggtcgtgaagatggttctatcatattggtgccagcaacagaaacaattatg
cttcaccttttacatggcaaacatcatcactatcataattgggcccagcctatggtcttg
agaggtcatcagggccgtgtaaactgcctcctctatccacatggggaaagcaatcgttat
gacatggctcacttggtatcgggaggaattgatttctccatcagtgtatgggacatgtac
actggcaacttggtgcaccgatttgttgtgcaagcaggccccatcgttcagcttcttgtg
cctccacctacgtgtactccgaggatacaaaactgtatctgcagtgtgtcggaggatcat
agtgttgccctgatgagcataaaggaaagaaaattggtgttattagcgtcacagcacctc
tatcctatcgtaacagtaaagtggagaccgcaacacgattttctcattgtatcatgtcaa
gatggatcagtctatatttggcaaatggaaacagggcatttggatcgagtcttacaaggc
gttcaggctgaagaagtaataagcgcatgcgacgaacattctcaaggcgtcagtagcaca
gatgctggccttgccaatccggctgtacatttgtttagaggtcttagacacagaaatttg
gctgcgataaggcatgctgcccagcgtggtattcagcaagtccttggggaacaaaataat
caacaggatattcatgaccattccaaactccgtacgtgtccccttatggtccaagggctc
cgaacacacaagcaagatgccaattcacatgtgctcttctttgatattgaagctctcatt
gttcagctgttgagtgatgaatatgccttaatgtccccgggaacattagaagcaaatgaa
ctcatccagagtagtcagtatcaacgtatgaatgtactaacccatccagcatcacccgaa
ggtgctaaaaagattgcagctatttctgtatttgaagagttctttggcaaggtgaaggat
aaagctggagaaatggaaaagaagatgaaagaaaaggacaaacatgacctgctcgggcgg
gcaaaggataaggcaatcaacatggagaagactttcaaggacagagacaaacatggaatt
ctgtcgaaggttaaggagtctgcagaaaatgttcaaacacttatccagtccaaagttgag
agtgttggcattagacctacctcacttactcctgacaaagagggaaacgatggccgtgtt
catatctctcgtcatttggatataaccgcgcagacgttgcaaattggtcaagttctgatg
tccctcctccattcatggggcttagatacatctcttgacactacatgtgaaaatatcctt
ggtctcctcaagcctcgtgtccccgtgtcttttggccttctgtcaaaatcaggatatatg
tcccttgtaatgccaacatggcatcctgttccgcataaccaaatgccgcccatcaatctt
ccgcctgagttagaggaagaacttccacccgagatggtgcagctggaacatctcacacag
gtatttacatcacgagggcactgggaaatatccagtgccatgacaactcaccatctactt
acgttagtgtcactggctaatacattacaagacatgaacgctgcaactctcattccagaa
caggagaggagacggaaaaatcacatgcaaagcagtaaaagcagccaagggaacaatcca
caagaagttgagtttgcacagcagcaagtcgtcatcaaacaagggtggtcccgtcttaca
gccctgcacacagtccttctaccaggtcaagttgctcagtctggttccacctcctttaca
cctcctatggtagagatcctggcccgaaggtggcaagaccggtgtcaggaggtacgagaa
gcagcacaagctttgttaaagactgagttgtctcgcatgggtgctgaaggacggaaagtt
ttagttgaagaatggtcggcacatcttccttcatatacagatccccttcctactacagta
cccacatataataaccatcacgaagccatgcagtctccgaaaccagagcacaattcaaca
aagcagcagaattcctcatctcataataatcaaactgttaacaatgtcggaaatggtagt
catactatcgttagtgaaagaccaatggaacctcatcctcaccttgatgaagaacatgaa
gaagaagaaccaatggatggtgaatcacatcgtgatgtagttgctcaatcagaaggaagg
cgtaagcaagcaacggctattatcctgttaggagttataggagcgtatcacgggcaagac
tcgcaagaaggcttcggacttggacagctggccatgcaaaccagtaaagctttagcatat
ctactgttagctcctgttagttccaagatgccaggtcacacgccccttcgcagagctgct
atggatctcatcggtcgagggtttcctgtttgggagccgtatcttgatgtagctaaagta
ttgctggcactgttagacctctgtgcggatacagatcgattagcaccaagcatgaagtat
ggcttacctctaattcctgaagcagattcatgtagaacagcatctaatgccctcacctgc
atagcagaagctcggccaccagccttcattaccaccatggccagagaggtagcaagattc
aacacactgcaacagaatgctcagtcgttacagatgaatctacataacagtgttttgtat
cgagccaaaacagaaattctacgaataatggactatttgatacagcacaaaagagtcttc
attatggatcttatggttgaagtaactgatatagtattacattgtgtggatccgggtcat
ctcaagagtcgaggcctcaatgaagtatttcctgccatttgtggatttccacaagtgtcc
cactgtcctcatactcgtcgtattgctactggagccaagaatggaagtattgctatgtat
gagcttcgagcttccaaatgtcaaatgataccagctcatcaggagccagtaactgccgta
tcattttctccagatggaaaatacctaacttcatattctatgatggagagtaaattgtcc
ttctggcaaacatcagcaggaatgtttggcctcggaacatcccaaaccaaatgtaccaaa
tcctactcaacaattccagtaccagaaatagtgcgcatgaatccacagcgtcttcctaaa
cttgtgtgggtctcaaacaggactgtagtcctcatgatggcagacggtacagagcaccgg
tttaatgcgtag

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