Oratosquilla oratoria (Japanese mantis shrimp): 143024797
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Entry
143024797 CDS
T11268
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
oot Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03013
Nucleocytoplasmic transport
oot03015
mRNA surveillance pathway
oot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143024797
09122 Translation
03013 Nucleocytoplasmic transport
143024797
03015 mRNA surveillance pathway
143024797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oot03019
]
143024797
03041 Spliceosome [BR:
oot03041
]
143024797
03009 Ribosome biogenesis [BR:
oot03009
]
143024797
03012 Translation factors [BR:
oot03012
]
143024797
Enzymes [BR:
oot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143024797
Messenger RNA biogenesis [BR:
oot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
143024797
mRNA cycle factors
Stress granule specific factors
143024797
Spliceosome [BR:
oot03041
]
Complex C
Other components
EJC/TREX
143024797
Ribosome biogenesis [BR:
oot03009
]
Eukaryotic type
90S particles
Helicases
143024797
Translation factors [BR:
oot03012
]
Eukaryotic type
Initiation factors
eIF-4
143024797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
AAA_22
AAA_30
TniB
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-GeneID:
143024797
NCBI-ProteinID:
XP_076040129
LinkDB
All DBs
Position
4:complement(39965316..39973952)
Genome browser
AA seq
402 aa
AA seq
DB search
MTEGRPRRVIPEDLSNVEFDTSEGVEVIPTFDNMGLSENLLRGIYAYGFEKPSAIQQRAI
KPVIKGRDVIAQAQSGTGKTATFSISILQMLDISVRETQVLTLSPTRELAVQIQKVILAL
GDYMSVQCHACIGGTNLGEDIRKLDFGQHVVSGTPGRVFDMIRRRTLRTRSIKMLVLDEA
DEMLNKGFRQQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLE
GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHG
DMPQKERDAIMKEFRSGQSRVLITTDIWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG
RFGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaggacgtccaagacgggttatacccgaagatttaagcaatgtggagtttgat
actagtgagggtgttgaggttatcccaacctttgataacatgggattaagtgaaaatcta
ctaagaggcatatatgcgtatggttttgagaagccctcggccatccagcagcgtgccata
aaaccagttatcaaggggagggatgtcattgcccaggcacagtctggtacagggaagaca
gccaccttctctatatccatcttgcagatgctggacatcagtgtcagagagacacaagtt
ctgactctctctccgacaagagaacttgctgtacaaattcagaaggtaatcctagcttta
ggagattacatgagtgtgcagtgtcatgcttgtattgggggaaccaacctgggagaggac
atccggaagcttgactttggacagcatgtggtgtcaggaacgccaggcagggtctttgat
atgatcaggcgaagaacactcagaacacgatctatcaagatgttggtgctggatgaagca
gatgagatgttgaacaaagggttccggcagcagatttacgatgtttaccgttacctaccc
cctgccacgcaagtggttctaatatcggccacacttccccacgaaattttggagatgacc
tcaaaattcatgacagacccaattcgtattcttgtgaaacgtgatgaattgacattggaa
ggcatcaagcaattcttcgtagcagtggagcgtgaggagtggaaatttgatacattgtgt
gatttatatgacacactgaccatcacacaagctgtcatcttctgcaacacaaaacgaaag
gtggactggttgactgagaagatgagagaagctaactttactgtgtcatccatgcatggt
gatatgccacaaaaggagagggatgctatcatgaaagagttcagatctggccaatccaga
gttctcatcacgactgatatctgggcacgaggcattgatgtgcaacaggtatctcttgtc
atcaactatgacttgcccaacaatcgtgagttgtacattcatcgtattggtagatctggt
cggtttgggcggaaaggtgtggcaattaattttgtcaagaatgatgacattcgtattctt
cgagatattgaacagtactattcaacacagattgatgaaatgcctatgaatgttgccgat
ttgatctaa
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