Oratosquilla oratoria (Japanese mantis shrimp): 143025355
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Entry
143025355 CDS
T11268
Symbol
Gnf1
Name
(RefSeq) germ line transcription factor 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
oot Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03030
DNA replication
oot03410
Base excision repair
oot03420
Nucleotide excision repair
oot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
143025355 (Gnf1)
03410 Base excision repair
143025355 (Gnf1)
03420 Nucleotide excision repair
143025355 (Gnf1)
03430 Mismatch repair
143025355 (Gnf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oot03032
]
143025355 (Gnf1)
03400 DNA repair and recombination proteins [BR:
oot03400
]
143025355 (Gnf1)
DNA replication proteins [BR:
oot03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
143025355 (Gnf1)
DNA repair and recombination proteins [BR:
oot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
143025355 (Gnf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
Rad17
RuvB_N
AAA_assoc_2
AAA_18
AAA_22
AAA_33
BRCT_2
nSTAND3
RNA_helicase
AAA_14
AAA_16
AAA_17
AAA_19
NTPase_1
Zeta_toxin
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
143025355
NCBI-ProteinID:
XP_076041004
LinkDB
All DBs
Position
5:complement(5919943..5996310)
Genome browser
AA seq
1116 aa
AA seq
DB search
MDIRKYFTAVGSSKKPSSSSSAQDRKKKKKHIIEDSDEEDPIPRIHKKPKVIVLDSDDDE
DDDMFKIKKTPEKKKKELPKSERLHTKPKSPPLKLVSVEDFFSSAPIKKKESKSISVKRK
KNEDASCHSDDDFEKTLNQLDEQKCNTKKAKHEIKGETIEYDSSNTAAGKSSLSEVKEEC
KHSPSAAPGKSFASKLSKLKQVDKIYKDKSPKDLEGSPDFSYKEKKPNVSESSTRKSEHV
KNEKEVAGKVKEDSNIKHERGEKIPVPTSGQNGHVKQKSVSPEKKEKKKSGVASPSDGKV
KQKGSGSSTKPTESPMKTSENLDDSVVEGTPDPNEKRKQSALAYKKFLQRAGPSNPGSKP
IPEGEPGCLEGLTFVITGVMESLDREEAAEIIKRYGGKVTTSVSRNTSYLLVGDDPGQSK
LKKAEQLNTKQIVEDDLLELLRTRPGKGDKLNPADIKKSSKVGLTEKFSKFEAAPAAKKV
EECQKMTSSVKKKKDSPEFKYLQESPKPTLASFSPKTTTLSQSSTMSSMSSQSSQSTSTQ
PLSSQDLAKHDGEMMMWVDKYKPVSVKNIIGQQGEKSNVKKLIKWLTNWHSNHNGNKKLT
RPSPWAKDDDGAFFKTALLSGPPGVGKTTTAHLVCKELGFDAVELNASDTRSKRSMEEMV
SQLIGNKSLSGFVQGQGGKTTNLALVMDEVDGMSGNEDRGGVQELIGLIKQSKIPIICMC
NDRNHPKIRSLANYCFDLRFSKPRLEQIKGPMMSICYRENIKIKPDALEQIVIGANQDVR
QILHHLSVWSANQKNLEVGQMKTEAQKAKKDMKMGPWDVAKKVFSEADHRNMSLYDRSDL
FFHDYSIGPLFVQENYPKVMPHAARGDRKALLNSLSKTAAILADGDLVEKTLRSYNAWSL
LPTQAVFSSVLPGYYMSGHLTSQIEFPRWLGNNSRRNKFDRLMQEIQVHMRLKISGNKLD
VGLDYSPMIRNAVTTPLSKKGQEGVPEAVNALNSYDLQREDLDAVIELSQWPGKKDPMAS
VDSKVKAAFTRAYNKDPHLNPYSVVSTIKKKAGRGASSQEGEEEEDEEEDEEEEDDIGSD
AMIKKRTKGEGKQGGNAGTSTRGRGRGGGRGRGRGK
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atggacatcagaaagtattttactgctgtgggttcttcaaagaagccaagtagcagttct
tcagcccaagacagaaagaaaaagaagaaacacatcattgaagactctgatgaagaagac
ccaatacccagaattcataagaaaccaaaggttattgtgttagattcagatgatgatgaa
gatgatgacatgtttaaaatcaagaagacacctgagaaaaagaagaaagaattgccaaag
tcggaacgattgcacactaaacccaagagtcctcctttgaaattggtatcagtagaggac
tttttcagctctgcacccatcaagaagaaagagtccaagtccatttctgttaagagaaaa
aagaatgaagatgcaagctgtcatagtgatgatgattttgagaaaacattgaaccaactg
gatgaacaaaaatgtaataccaagaaggcaaaacatgagataaagggagaaactatagaa
tatgatagttcaaacactgcagctgggaagagttcactctctgaagtcaaagaagaatgc
aagcattcaccaagtgctgcacctggaaagagcttcgcaagtaaactctccaaattgaaa
caagtagacaaaatatacaaggataaaagcccaaaggacttggaagggagcccagacttc
agttataaggagaagaaaccaaacgtgtctgagagcagcacaaggaagagtgaacatgtc
aagaatgagaaggaggtagcagggaaggtaaaggaagattcaaatattaaacatgaaaga
ggagaaaagatccctgttcccactagtgggcagaatggacatgtcaaacaaaagtctgtt
tcacctgagaagaaagaaaagaaaaagagtggagttgcttcaccttcagatggtaaagtg
aaacaaaagggtagtggcagtagcaccaagccaacagaatcccccatgaagacctcagaa
aacctggatgacagtgtggttgaaggaacacctgatccaaatgaaaaaagaaaacagtct
gctttggcatacaaaaagttcttgcagcgagcaggaccaagtaaccctggaagcaaaccc
atacctgagggtgagccagggtgcctagaaggtctcacctttgttatcaccggcgtgatg
gaaagtctcgaccgggaggaggcagccgagatcatcaaaagatatggagggaaggtaacc
actagcgtctcacggaacacatcctatctcttggtgggggacgatccaggacaaagtaag
cttaagaaggcagaacagctgaacactaaacagatcgtggaagatgacctgttggaattg
ctaaggacacgacctgggaaaggggacaagctcaatccagcagatatcaagaagagtagc
aaagtgggattgactgagaagttctccaaattcgaggcagcaccagcagcaaagaaggtt
gaagaatgccaaaagatgacatcttctgtcaaaaagaagaaagactctcctgaatttaag
tacttgcaagagtctcccaaaccaactttggcctcattttcaccaaagactacaactttg
agtcagagttccaccatgtcctccatgtcctcccagtcctcccagtccacatcaactcag
ccactgtcctcccaagacctggccaagcatgacggggagatgatgatgtgggtggacaaa
tacaaaccagtgagtgtcaaaaacattatcggtcagcaaggagagaagtccaatgtcaag
aagttgataaaatggttaaccaactggcacagtaatcataatggaaacaagaaactaacc
agaccaagtccctgggccaaagatgatgatggtgcattcttcaaaactgcgcttctttca
ggcccacctggagtaggtaaaaccaccacagctcatctggtgtgcaaggaattgggattt
gatgctgtagagttgaatgcttcagacacaagatcgaagcgatcaatggaggaaatggtg
tcacagctcatcggcaacaaatctctgtcaggatttgttcaaggtcagggaggaaaaaca
accaacttagccctagtcatggatgaggttgatggaatgtctggcaatgaagatcgtggt
ggtgtccaggaactgattggtttgattaagcagtccaaaatacccatcatctgcatgtgc
aatgacagaaaccacccaaagattcgctccctagccaattattgctttgacttacgcttc
tcaaagccaagattggaacagatcaagggtcccatgatgtccatatgttatcgggagaac
ataaaaattaagccagatgctttagagcagattgttatcggtgccaaccaagatgtgcgg
cagatcttgcaccacctttcagtttggtcagccaaccaaaagaatttagaagtaggacag
atgaagacagaagcacaaaaagctaaaaaggacatgaaaatgggaccatgggatgtagca
aaaaaagtgttttcggaggctgaccacagaaacatgtctctgtatgatcgatcagatcta
tttttccatgactactccattggacctctgtttgtgcaagaaaattaccccaaagtgatg
cctcatgctgccagaggtgacaggaaagctttattgaacagcttaagtaagactgcagct
attcttgctgatggtgacttggttgaaaagacactacgatcatataatgcttggagtcta
cttcctacacaggctgtgttcagctccgttcttcctgggtactacatgtcaggtcacttg
acatcacaaattgagttcccaaggtggctggggaacaacagcagacgcaacaaatttgat
cgactaatgcaggagatacaggtccacatgagattgaaaatatcaggcaataagttggat
gtgggccttgactacagcccaatgattcgcaatgcagtcacaactccattgtctaagaaa
ggtcaggaaggagtgccagaagctgtaaatgcactcaattcatacgacctccaaagagaa
gacttggatgctgtcattgagctttcacaatggcctggcaagaaggacccaatggcttct
gtagacagcaaagtgaaagcagctttcacaagagcttataacaaggatcctcacctgaac
ccatactctgttgtttcaacaataaagaagaaagcaggtagaggagcctcaagccaggaa
ggggaagaagaggaagatgaagaagaggatgaagaagaggaggatgacattggtagtgat
gccatgataaagaaacgaactaaaggagaaggaaagcaaggtggcaatgcgggaaccagc
accagagggagaggtagaggtggtggtagaggaagagggagaggaaagtaa
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integrated database retrieval system
