KEGG   Oratosquilla oratoria (Japanese mantis shrimp): 143026208
Entry
143026208         CDS       T11268                                 
Symbol
Polr2E
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit Rpb5
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
oot  Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03020  RNA polymerase
oot03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:oot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    143026208 (Polr2E)
  09124 Replication and repair
   03420 Nucleotide excision repair
    143026208 (Polr2E)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oot03021]
    143026208 (Polr2E)
   03400 DNA repair and recombination proteins [BR:oot03400]
    143026208 (Polr2E)
Transcription machinery [BR:oot03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     143026208 (Polr2E)
  RNA polymerase III system
   RNA polymerase III
     143026208 (Polr2E)
  RNA polymerase I system
   RNA polymerase I
     143026208 (Polr2E)
DNA repair and recombination proteins [BR:oot03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      143026208 (Polr2E)
SSDB
Motif
Pfam: RNA_pol_Rpb5_N RNA_pol_Rpb5_C NA-iREase1 DUF7645 Mrr_cat
Other DBs
NCBI-GeneID: 143026208
NCBI-ProteinID: XP_076042372
LinkDB
Position
1:55992860..56009608
AA seq 210 aa
MDDEAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLEQFKDQFGDKPSERRPARSDLIV
LVAHNDDPTDQMFVFFPDESKVGVRTIKTYCTRMQEENIQRAIIVVQSGMSPSAKQALVD
MAPKYILEQFLESELLINITEHELVPEHVVMTAEEKTELLQRYKLKDNQLMRIQAGDPVA
RYFGLKRGQVVKIIRPSVTAGRYISYRLVV
NT seq 633 nt   +upstreamnt  +downstreamnt
atggatgatgaggcagaaacctacaagctatggcgtattcgtaaaactatcatgcagctg
tgtcacgatagaggttacttggtaacacaggatgaattggaccaaactttagaacagttt
aaggatcaatttggggataagccctcagaaagacgccctgcaaggtctgatcttattgtt
cttgttgcccacaatgatgatcctacagatcagatgtttgttttcttcccagatgagtca
aaggttggagtgcgaactatcaaaacatattgcacacgtatgcaggaagagaacattcaa
cgtgccatcattgttgttcagtctggcatgtctccatcagctaaacaggcactagtagat
atggctcctaaatatattctagaacaatttctggaatctgagttgctcattaacatcaca
gaacatgagttggttcctgaacatgtagttatgactgcagaagagaagaccgaattattg
caaagatacaaactgaaggacaaccaactcatgagaattcaagcaggagaccctgtagca
agatattttggtctcaagagagggcaggttgtaaaaattattaggccctcagtgacagct
ggccgatatatttcctacagacttgtagtttaa

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