Oratosquilla oratoria (Japanese mantis shrimp): 143027592
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Entry
143027592 CDS
T11268
Symbol
tst
Name
(RefSeq) superkiller complex helicase subunit twister
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
oot Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143027592 (tst)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oot03019
]
143027592 (tst)
Enzymes [BR:
oot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143027592 (tst)
Messenger RNA biogenesis [BR:
oot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
143027592 (tst)
mRNA degradation factors
3'-5' decay
Ski complex
143027592 (tst)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
143027592
NCBI-ProteinID:
XP_076045044
LinkDB
All DBs
Position
8:15923608..15945511
Genome browser
AA seq
1212 aa
AA seq
DB search
MERLRTIGGVPPILPSLTDQIEEYLLKPEDLQIHDPIYSRRWWPRVPDPLSLYTISVGPP
SSTLEVERDPATGAITGLREVAIQDAGSTAKNSLSMKRAPGPPEEIVRGSSTNFPFWPGG
FPEPSLDQTFLGSSDLNFKNLLNKHPKLSRGMEFAKEEVKEEVKEVEEVKEEPKPSELIV
SIADMLQVDENVLKIFDAKEERTKGKAELKLDDDNDAEEGSTLESAVIAEPAPKIEEHVL
KISEEAPPRHPKSTEWAEMIDVSAPVDDFHARVPNMAIQYPFELDTFQKQAVLHLQNHDC
VFVAAHTSAGKTVVAEYAIALANKHMTRSVYTSPIKALSNQKYHDFRTRFDDVGLLTGDI
QINPKAACLIMTTEILQSMLYNGSDLIRDLEWVIFDEVHYINDPDRGHVWEEVIIMLPSH
VNIVLLSATVPNTLEFADWIGRIKKQKIYVISTTKRPVPLEHYLYTGMGGKSKNERFLIV
DSSGKFVKKGYNDAVAAKKERASKAQQQYGPKHRQNIGEKQEKNMWIGLLDHLTKCELLP
IVAFTLSKKRCDSNAAMLLSQDLTTQKEKHEIDSFFKMCVDRLQGTDRELPQILHTRELL
RKGIGVHHSGILPLVKEVVEMLFSKGLVKLLFATETFAMGVNMPARCVVFDSPRKHDGKR
FRDLLPSEYIQMAGRAGRRGLDPTGTVVILCKGDVPELSELHAMMLGKPTKLESQFKLTY
SMILQLLRVEALRVEDMMKRSFSESFQMKNQEKYERELKKVTEEMTNLPSISCMLCKDNE
EYYAVTRDYITFRKEFFTTVYLQAGLAKVLSPGRLVLISHNQFQNQLCCIVRVDSKTKGK
ITVLTLLDERNKVTLTDEEASIRELLAAGKSGLQILEKTSHHDIVEIPAEGLVALVSKTL
KVDGEKIIDNVKKRQIPRFRDDPPSSSVMEALKELQRINESGGEGLKYLDLRKDLNIRKL
ETVDKISLLEQLKGKVLKTSMECPQFAEHFSQTYKKLKLKEDIARLKYLMSEESLHLHPE
YQMRLEVLKQLGYIESSGTVTLKGKVACEMGNHELMITELVLENVFDNMPIEETVALLSS
MVFQQKNCSEPSLTPELESGIKKFKSVAQKIGEVQRDCGLKEAVGDYVDQYNFGLVEVTY
EWALGKPFNEIMSRTDVQEGITVKCIQRLDETLRDVRNAARIIGEPTLYQKMEEASTAIK
RDIVFAASLYTQ
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggagaggttaaggaccataggtggagttccacctatcttaccctctttgacggaccag
attgaggaatacctgttgaaaccagaagatctccaaatacacgatccaatttattcacgt
cgttggtggccaagagtcccagatccactttctttgtacacaatatcggttggaccacca
tcctcgactctagaggttgaaagagaccctgcaacaggagctatcacaggactgagagaa
gtagcaatccaagatgctgggtctacagcaaaaaactccctatcgatgaagagagcacct
ggaccgccggaagaaattgtcagaggctcttcgaccaactttccattttggcctggagga
ttcccagaaccttctcttgaccaaacttttcttggaagtagtgatttaaatttcaaaaac
ttgttaaacaaacatcccaagctctccaggggtatggagtttgcaaaggaagaagttaaa
gaggaagtaaaagaggttgaagaagtgaaagaagaaccaaaaccatcagaacttatagta
agcattgctgacatgctgcaggtagatgaaaatgtgctgaagatttttgatgcaaaagag
gaacgtactaaggggaaagcagagctgaagcttgatgatgacaatgatgctgaagagggc
tcaacactagaaagtgctgtcattgcagaacctgcccctaaaattgaggaacatgttctt
aaaataagtgaagaggctcctcctagacatcctaaaagcacagagtgggctgaaatgatt
gatgtttctgcccctgttgatgattttcacgctcgggtaccaaacatggctattcagtat
ccctttgaactggacactttccagaaacaggctgtgttacatctacaaaatcatgactgt
gtctttgttgcagctcatacttcagctgggaaaacagttgttgctgaatatgctattgct
cttgctaacaagcacatgaccagatcagtgtacacttcaccaatcaaagctttgtccaat
cagaaatatcatgatttcaggacaagatttgatgatgtaggtcttctaacaggtgatatt
caaattaatccaaaagctgcatgcctaattatgaccacagaaattttgcagtctatgctt
tataatggaagtgatctcatacgtgatttagagtgggtcatatttgatgaagttcactat
ataaatgatccagatcgtggacatgtatgggaagaagtcattatcatgcttccatctcat
gtcaatatagttctcctttcggctactgtcccaaatacacttgaatttgcggattggatc
gggagaataaagaaacagaaaatatatgtcatcagcaccactaagagaccagttccactg
gaacattatttgtacacaggaatgggaggtaaaagtaagaatgagcgcttcctcattgta
gattccagcggtaaatttgtaaagaaagggtataatgatgctgttgcagccaagaaggag
agagctagcaaggcccaacagcagtatggtcctaagcatagacaaaatataggggaaaaa
caagagaagaatatgtggattggcttgcttgatcatctaacaaagtgcgaactcttgccc
atagttgccttcaccttatccaaaaagaggtgtgatagcaatgctgcaatgcttttgagc
caggatttaacaactcagaaggaaaaacatgagattgatagtttcttcaagatgtgtgtt
gatagactgcagggcactgatagggagttaccacagattttgcacaccagagaactgctt
aggaaaggtattggagtacatcacagtggtatcctgccccttgtaaaagaggttgtcgaa
atgctcttttcaaagggtttagttaaactcttgtttgcaacagaaacctttgcaatgggg
gtaaatatgccagcgcgttgcgtggtctttgattcccctcgcaagcatgatggtaagaga
tttcgtgacctgcttccaagtgaatacatccagatggcaggacgagctggtcgaagaggc
ttggacccaacaggaacagttgttatcctgtgcaagggggatgtgcctgaattatctgag
ttgcatgccatgatgcttggcaagccaaccaaactagaatcacaatttaaattaacttat
tcaatgatactccagctgctaagagttgaagcactaagagttgaagacatgatgaaaaga
tctttttcagaatcgttccaaatgaaaaatcaagagaaatatgaaagggagcttaagaaa
gtaactgaggaaatgacaaatctcccttctatttcatgcatgttgtgtaaagataatgaa
gagtattatgcagtcacccgggactacataactttccgaaaagaattttttacaactgtg
tatttacaagctggacttgccaaagttttgtctccaggaaggctggttttgatttctcat
aatcagtttcaaaaccagctttgttgtattgttagggttgattcaaaaactaaaggtaaa
ataactgtgcttaccttgcttgatgagagaaataaagtaacactaacagatgaggaagct
agtatcagagaacttttggcagcaggcaaaagtggattgcaaattttagagaagacatca
catcatgatatagtagagattccagctgaaggccttgtggcattagtaagtaaaacattg
aaggttgatggtgagaagatcattgataatgtgaaaaagcgacagataccacgcttcaga
gatgacccaccaagttctagtgttatggaagcactgaaagagctacagcgaattaatgag
tcagggggtgaaggactcaaatatttggatctgcgaaaggatctgaacatccgaaaactt
gagacagtggacaagatttcattgttggagcagttgaagggtaaggtcttgaaaacatca
atggagtgcccacagtttgcagaacacttttctcagacgtacaagaagctgaaactaaaa
gaggatattgctagactgaagtacttgatgtcagaggagagtctccatcttcatccagaa
tatcagatgcgattagaagtactaaaacaacttggttatattgaaagcagcggtacagtg
actctgaagggtaaagtagcttgtgaaatgggtaatcatgaactgatgataacagagctt
gtactagagaatgtttttgataacatgcccatagaagaaacagttgctttactctcaagc
atggtttttcaacagaagaattgttctgaacctagtttaacacctgaattggagagtgga
attaagaaattcaagagtgttgctcaaaagatcggagaagtacagagggattgtggacta
aaagaagcagtgggagattatgttgatcagtataactttggactggtagaggttacatat
gaatgggctcttgggaaaccattcaatgaaattatgtctcggacagatgtacaggaaggc
atcacggtaaagtgtattcaaaggttagatgaaactctacgtgatgtacgaaatgcagct
agaattattggtgaacctactctttatcagaagatggaagaagcttctactgcaattaag
cgtgacattgtgtttgctgctagtttatatacacaataa
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integrated database retrieval system
