Oratosquilla oratoria (Japanese mantis shrimp): 143033427
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Entry
143033427 CDS
T11268
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
oot Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143033427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oot03041
]
143033427
Spliceosome [BR:
oot03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
143033427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Gbeta
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
PRP4
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_WDR41
eIF2A
Beta-prop_WDR19_1st
Ge1_WD40
Beta-prop_SCAP
WD_LRWD1
Nbas_N
Beta-prop_Nup120_160
Beta-prop_SPT8
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
143033427
NCBI-ProteinID:
XP_076054968
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Position
15:45348980..45369795
Genome browser
AA seq
496 aa
AA seq
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MSDGEDSPLGGVTGEQQWYASVEGHARGEDEPSPPGSPKANIHVSNEYMDLDQAEIIDEK
KALLEEFERKRRARMIQVSTDDTEVKMHLRELGQPICVFGEGPADRRNRLKELLARLGED
AVKRKTEDEAPKKEHPEETWYHEGPPSLKEARMYLVGYSIPRAKARLKRERLEKAVPEAT
RTAKKQETQNRLRSFGLLGSQNADARPISFCRFSPDGEMLATSSWSGLCKLWKVPECTEV
RTLRGHCNYVDCVEFHPSATINMETSSLNLVSSGRDGTVKLWNLENEEPIAELPNMEARV
SRVRFHPSGRFLGACVHDNSFRLWDLEIQEEVLFQEGHSKAVFCLAFQDDGSLAVTGGMD
AFGRLWDLRMGRCIMFLTGHQNPVVAVDWSPDGYHLATGSEDNSVKIWDVRSRGCVYTIP
AHTSIVSGTRYDPISGNYIATSSYDNSVHLWYHGSFQPMKSLEGHGQKVMGVDISPQGSM
VVTCSFDRTFKLWGPE
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatggtgaagattctccactgggtggggtgacaggggagcaacagtggtatgcc
tctgtggaaggccatgcaaggggtgaagatgaaccatctccaccaggtagcccaaaggct
aatatccatgtaagcaatgaatatatggatttagaccaggcagaaataattgatgagaag
aaagctcttcttgaggaatttgagagaaaacgaagagctcgtatgattcaagttagcaca
gatgacacagaggttaagatgcatcttcgagaattagggcagccaatttgtgtatttggt
gaaggaccagcagacagaagaaaccgtttgaaagagcttttagcccgtctaggtgaagat
gctgtaaaacgtaagacagaagatgaagcaccaaagaaagagcatcctgaggaaacttgg
taccatgaaggccctcctagtttaaaagaagctcgaatgtatcttgttggttactcaatc
ccaagggctaaagcaaggttgaagagagagagactagaaaaggcagtaccagaagcaaca
cgaactgcaaagaaacaagaaacacaaaataggcttcgttcctttggacttttgggtagt
cagaatgcagatgctcgaccaatatctttttgtaggtttagtccagatggagaaatgctt
gccacttcttcatggagtggtctctgtaagttatggaaagtaccagaatgcactgaagtg
agaacactgagagggcattgtaattatgtagattgtgtagaatttcatcccagtgctaca
atcaacatggagacttcatcattgaatcttgtatcttctggacgagatggaacagtgaag
ctttggaaccttgagaatgaagaaccaattgcagaattacctaatatggaagctcgtgtc
tctcgggttcgatttcacccttctggaagatttcttggtgcctgcgttcatgacaacagc
ttcagattatgggacttagagatacaagaagaagtacttttccaagaaggtcattcaaaa
gcagtattttgtttagcatttcaagatgatggttcacttgcagtcacaggtggaatggat
gcttttgggcggttatgggatttgagaatgggtcgttgtatcatgtttcttactggtcat
caaaacccagttgttgcagtggactggtcacctgatggataccatcttgctactggtagt
gaggataatagtgtaaaaatctgggatgtgcgctcacgaggttgtgtatatacaatacca
gcccatacttccatagtctcaggaactcgttatgatccaataagtggaaattatattgct
acttcatcttatgataattctgttcatctttggtatcatggatcattccagccaatgaaa
tcacttgaaggccatggtcaaaaagtcatgggggtagacatttcaccacagggcagcatg
gtagtcacatgctcctttgatcgaactttcaaactttggggcccagagtaa
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