Oratosquilla oratoria (Japanese mantis shrimp): 143033836
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Entry
143033836 CDS
T11268
Symbol
RtcB
Name
(RefSeq) rtcB RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oot Oratosquilla oratoria (Japanese mantis shrimp)
Brite
KEGG Orthology (KO) [BR:
oot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oot03016
]
143033836 (RtcB)
Enzymes [BR:
oot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
143033836 (RtcB)
Transfer RNA biogenesis [BR:
oot03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
143033836 (RtcB)
Prokaryotic type
tRNA splicing ligases
143033836 (RtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
143033836
NCBI-ProteinID:
XP_076055500
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All DBs
Position
16:13753390..13758115
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AA seq
506 aa
AA seq
DB search
MVVRQYKEELNYLDQVTPNCWRIKKGFQPNMNVEGVFYVNDHLEKLMFDELRNACRPGMV
GGFLPGMKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMDDPKAVVSPGGVGFD
INCGVRLLRTNLTESDVHPVKESLAQSMFDHIPVGVGSKGIIPMTARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMAQADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIEQKGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDKIETNDRQLACARIM
SEEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFQTSPDDLDMHVIYDVSHNIAKVE
QHWVDNKLKTLLVHRKGSTRAFPAHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
VETFGSTCHGAGRALSRAKSRRNIDYLDVLQKLQDMGITIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggttcgtcagtacaaggaggagctaaattacttggaccaggtgaccccaaactgt
tggcgtataaaaaaaggttttcagcccaatatgaatgttgaaggtgtcttctatgtaaat
gatcatcttgagaagttaatgtttgatgaattacgaaatgcttgccgaccaggaatggtt
ggtggtttcttaccaggcatgaagcagatagcaaatgttgcagccttacctggaattgtt
ggcagatctgttggacttcctgatgtacactctggctatggctttgctattgggaacatg
gctgcctttgatatggatgaccccaaggctgttgttagtccaggtggggtaggttttgat
atcaattgtggagttcgtcttcttcgtaccaacctgacagagagtgatgttcatccagtg
aaggagtccctggcccagtccatgtttgaccatatacctgtaggtgtagggtccaagggt
attattcctatgactgcacgggatctagaagaggccttggagatgggaatggactggtct
cttcgagagggttacatctgggctgaggacaaggaacactgtgaagagtatggccgtatg
gctcaggcagatccagccaaggtatccatgagggcaaagaagcgaggacttcctcagctt
gggacccttggggcaggtaaccactatgcagagatccaggtagtggatgaaatctatgac
aaatgggctgcaagcaaaatgggcattgaacaaaagggacaagtttgtgttatgattcat
tctggttcacgaggatttggtcaccaagttgccactgatgcactggttgcaatggagaaa
gccatgaagagagacaagatagaaacaaatgatcgtcagctagcatgtgcaaggataatg
tcagaggaaggccaggattatttgaagtcaatggctgcagcagccaattttgcatgggtc
aacagatcttctatgacatttttaagtagacaggcctttgccaaacagttccagacaagc
ccagatgacctggatatgcatgtaatatatgatgtatctcacaacattgccaaggttgag
cagcattgggttgataataaactgaagactttgttagtacaccgtaagggttcaacaagg
gcctttccagcacatcatccactcattcctgttgattaccaactgactggtcaacctgtt
cttattggtggaaccatgggtacatgttcgtatgtcctcacgggtactgagcaaggcatg
gtggaaacctttggctcaacatgccatggagctgggcgagccttgtccagagctaaatcc
cgacgaaatatcgactatttggatgtgttgcagaagttgcaggatatgggaatcacaatc
agagtagcatctcccaaactagtcatggaagaagctcccgagtcatataagaatgttact
gatgttgtagatacttgtcatgctgcagggatcagcaaaaaatgtatcaaattaaggcca
attgcagttataaaaggttga
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