KEGG   Oratosquilla oratoria (Japanese mantis shrimp): 143034502
Entry
143034502         CDS       T11268                                 
Symbol
Rrp4
Name
(RefSeq) exosome complex component Rrp4 isoform X1
  KO
K03679  exosome complex component RRP4
Organism
oot  Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oot00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    143034502 (Rrp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oot03019]
    143034502 (Rrp4)
Messenger RNA biogenesis [BR:oot03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     143034502 (Rrp4)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     143034502 (Rrp4)
SSDB
Motif
Pfam: S1_RRP4 ECR1_N KH_6 ECR1_N_2 RRP40_S1 PCB_OB
Other DBs
NCBI-GeneID: 143034502
NCBI-ProteinID: XP_076056746
LinkDB
Position
17:23303842..23321016
AA seq 301 aa
MNNSFQENSSKMEIQLACERPPRRGMVKVHGGVHSRLVTPGDVISTDTSFMRGHGTYLED
GIQIASVAGIVNRVNRLITVTPLRQDYQGAVGDTVVGRIMQVQSKRWKVDVNSRLDAELR
LANIQLPGGEQRRKSLEDERGMRALLTEGDIVCVEVQKISDEGLLKLAARSNKFGKLSQG
ILIAVSPSLMVQDKQRIHDLPCGARVIFGANGYVFVTPITHQNLASNYTVSIEEVPLDVR
TTIGRLHNCITLLSFHSIMISPTSVMAAYNLSLEQEYLIKDLLKPEVMQDIAIATVQFMN
D
NT seq 906 nt   +upstreamnt  +downstreamnt
atgaataacagctttcaagagaacagttccaagatggaaattcaacttgcttgtgaaagg
ccccctcgaagagggatggtgaaagtgcatggaggagtgcattctcgccttgtcacccca
ggggatgtaatctccactgacaccagttttatgagaggccatggtacctacctggaagat
ggtattcaaattgcttcagtggctggtattgtgaatagagtcaaccgtctgattactgta
acaccactgcgccaggattaccagggagctgtaggagacactgtcgtaggaagaatcatg
caggtgcagagcaagcgctggaaagtggatgtaaattctcggttggacgctgagttaaga
cttgccaatatacagctcccaggtggagaacagcgccgaaagagtcttgaagatgaaaga
ggtatgagagctcttctgactgaaggagatatagtttgtgttgaagttcagaagattagt
gatgagggcttgttgaagcttgctgccagaagtaataaatttggcaagctttcccagggt
attttgatagcagtgtctccttcactgatggtccaagataaacagcgtattcatgatttg
ccttgtggagcacgagtcatatttggagcaaatggatatgtctttgtcaccccaataact
caccagaacttggcctcaaactacacagtcagcattgaagaagtaccgttagatgttcgg
actacaattggaaggctccacaattgtatcacactcctgtcatttcactccataatgata
tcaccaactagtgttatggctgcatataatctatctctggaacaggaatatctgattaaa
gatttgctgaagcccgaagtcatgcaagatattgccatagctactgtgcagtttatgaat
gattga

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