Oratosquilla oratoria (Japanese mantis shrimp): 143035718
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Entry
143035718 CDS
T11268
Symbol
Smg5
Name
(RefSeq) smg5 nonsense mediated mRNA decay factor isoform X1
KO
K11125
protein SMG5
Organism
oot Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143035718 (Smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oot03019
]
143035718 (Smg5)
03032 DNA replication proteins [BR:
oot03032
]
143035718 (Smg5)
Messenger RNA biogenesis [BR:
oot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
143035718 (Smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
143035718 (Smg5)
DNA replication proteins [BR:
oot03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
143035718 (Smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
BUD22
Motif
Other DBs
NCBI-GeneID:
143035718
NCBI-ProteinID:
XP_076058718
LinkDB
All DBs
Position
19:9508807..9587027
Genome browser
AA seq
973 aa
AA seq
DB search
MKKSVPITEEKTENLEQLKRLTKYVSEGIRKADATVENAGSVGAVFTSAGIGARSRLRDA
CERILQLGPSAHTRKFEEVLWRKVYYEPLSVGKRMRKGGSWNPAERHWIVRHLQDGIAYY
HHLLHIFASENRMAVNSIDLIPPFERDSRPVATESDAVQEFVQRCLTCLGDLARYMLEVP
HTPSYPLAVRYYLQALSPRCDGGGLIHSNLANVYISQQQHILGAVHCFRALTCEKAFEGA
EGNLKRLLERSKVVCEQLPEDSRPSCTQEQHQQFVHTILYLVYCITFNKSTQKVAKLCQE
SLVSLGKILENWDEIEMDTNDRSLAPSPSPQGTPNGLLHTTEERLTPNGHEHLRSSPEKM
CALQPCKLTPELLVAICALLILCLHKLNKSGHLCISSTALVQKQHSKTQHNQSSTHSGMC
RALLISMFMTFISHVNERLQQRISLIDPTFLQALLPNSQEDKEKQIEDELEEEKTNKGDG
EEENQGGDKKKAKGSKGRQLAKLRRRRRASLEHSDMSEDEDDEAGNHSSSSLEGDKGDSS
SGDSSSDEEIDLSQLDLSEDEDDSDEDVKVESDQEWQGLTPEEHLQLIGREGFLPAVYVL
GEWLQQDEAALAMCANMLDSLWATVSQLLNLLKLDLDKLTQGWSTNPFRRLARLVQEGAS
EIVDSAPLPEDLQLAPVLPSPHAHKTVPLPLRTKELVLLRVHRISQFGDTVSGRKDAPLI
KDTKTSLFRAAAHTPAMKDIHHTPAGEENNVNTVEDQETESVGRGAGRREKEHQHEERRL
AGMQSLTAQWLQHEVKTLEERTARHATLGMYLVPDASALIHHLPAIKALIANPTHMIIIP
QTVIALLDQQKRESLGARDAIRWLEVKFRHGSRFIRSQRPHERSHLPLIKYPKRKDKEAW
DWFQLVECCHYLSSQVKHNTHVKTSTVTLLTGDHNLHVDKNYSPAGIANAAGAELEHMEE
FMRKWQTSTKGHS
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatcagtgcctatcacagaggaaaagactgaaaatttggagcagcttaagcga
ttgaccaagtatgtgagtgaagggattcgcaaagctgacgctacagtggagaatgcagga
agtgttggtgctgtcttcacatcagctggcattggtgctcgctcccgtctgagagatgcc
tgtgaacgaatcttgcagttgggtcccagtgctcacacacgcaaatttgaggaggtgctt
tggcgcaaggtttattatgagcctttatctgttggaaaaaggatgagaaagggaggttca
tggaatccagcagagagacattggattgtgcgacaccttcaagatggcatagcatattac
catcacctgcttcatatctttgcctcagaaaataggatggctgtcaactctattgatttg
attcctccatttgagagagacagtagaccagttgccacagagagtgatgctgtgcaggaa
tttgtgcagcgttgcctgacatgcctcggagatctggcacgatacatgctagaggtgcca
cacacaccttcttaccccttggcagtgagatactacttgcaggctctcagtccaagatgt
gatggtggaggattgatccacagcaatttggccaatgtttacatctcgcaacaacagcat
attcttggagctgtccactgctttagggcgctgacatgtgagaaggcatttgaaggagca
gaaggaaatttgaagcgcttgttagagcgcagcaaggttgtatgtgaacagctaccagaa
gattcaaggcccagctgcactcaagagcagcatcagcagtttgtgcacactatcttgtat
ctggtatactgcatcacctttaacaagtctacacagaaagtggcaaagttgtgtcaggaa
tctcttgtcagtcttggcaagattctggaaaactgggatgaaattgagatggacaccaat
gaccgttcattggcccccagcccatcaccacaaggaactccaaatggactgcttcatact
acagaggagaggttgaccccaaatggccatgaacacctcaggtcctcacctgagaaaatg
tgtgctttgcaaccttgtaaacttacaccagaacttctagtggcaatctgtgctctcctt
atcctctgtcttcataaactcaacaagtctggtcatctctgcatctcgtccactgccctg
gttcagaagcaacatagcaagacacagcacaaccagagcagcacacatagtgggatgtgc
cgagctcttctcatctctatgtttatgaccttcatttcccatgtaaatgaacgtttgcag
caacgtatttccctcattgaccctacttttctccaggctcttctgcccaactcccaggag
gacaaagagaaacagatcgaagatgaacttgaggaagaaaagacaaataagggggatgga
gaagaggaaaaccaaggaggcgacaagaaaaaagccaagggaagtaagggacggcaactt
gccaagctaaggagacgtagacgggccagtctggagcattctgatatgagtgaagatgaa
gatgatgaagcaggcaatcacagcagcagctctttggaaggggataaaggagactcttct
tcaggagactcttcttcagatgaagaaattgacctttctcaactggatctctctgaagat
gaagatgattctgatgaggatgtaaaggttgagtctgatcaggagtggcaaggcttgaca
cctgaagagcatctacagctgattggaagggagggtttcctaccagctgtgtatgttttg
ggtgagtggttgcagcaggatgaagcagcccttgcaatgtgtgccaacatgcttgactct
ctttgggcaactgtttcccagctcctcaaccttctcaaactagatcttgacaagttaact
caaggttggtccacaaatcccttcagaagactggccaggttggtgcaagaaggagccagt
gaaatagtagactctgcaccgttgcctgaggatctgcagcttgccccagtcttgccctct
cctcatgcacacaagacagtcccgctgcccttacgcactaaagaactggtattgctgcgt
gttcaccgcatttcccagtttggtgatactgtttctggacggaaggatgcaccactgata
aaggacactaagacatcactgtttagggcagcagcacatacaccagccatgaaggatata
catcatacaccagctggggaagagaataatgttaatactgtggaagaccaagagacagaa
tcagttggccgaggagcaggacgcagggaaaaagagcatcagcatgaagaacgccgtttg
gctgggatgcagtccttgacagcacaatggttacaacatgaggtcaagacattggaggaa
cgtactgctcgccatgccactcttgggatgtacttagtgcctgatgcctcagccctgatt
caccatcttccagccatcaaggctctcattgcaaacccaacacacatgatcatcattcca
cagacagttattgccttgttggaccaacagaagcgtgagagccttggtgcacgggatgcc
atacgctggctggaagtaaagtttcgtcatggctcaagatttattcgttctcagaggccc
catgaacggtcacacctccccctcattaagtatcccaagcgcaaagacaaggaagcatgg
gactggttccagcttgtggagtgttgccattacctgagctcccaggtcaagcacaacacc
catgtcaagacttcaacagttacactactgactggagaccacaacctccatgtggataag
aactactctccagcaggcattgccaatgcagcaggtgctgaactggaacacatggaggaa
tttatgcgtaagtggcagacctctaccaaagggcacagctga
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