Oratosquilla oratoria (Japanese mantis shrimp): 143036540
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Entry
143036540 CDS
T11268
Symbol
LSm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1 isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
oot Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143036540 (LSm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oot03019
]
143036540 (LSm1)
Messenger RNA biogenesis [BR:
oot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143036540 (LSm1)
mRNA degradation factors
5'-3' decay
Lsm complex
143036540 (LSm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
143036540
NCBI-ProteinID:
XP_076060131
LinkDB
All DBs
Position
20:45793553..45800733
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AA seq
133 aa
AA seq
DB search
MTSPGAAQLFDELDKKLMVYLRDGRTLIGYLRSVDQFANLVLHRTIERIHVGKRYGDIDR
GVFVIRGENVVLLGEIDEVKEENTPLEQVSIEEILEAQRIEQERRQEQEQLRARFMKERG
LQYTAEIGPDDMY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgcctggtgctgcccagctttttgatgaattggataaaaagctgatggtttac
ctgcgtgatggtcggacattaattggttacctgcgcagtgttgatcagtttgctaatcta
gtgttgcaccgtacaattgagcgtatccatgttggtaagcgctatggagatattgatcga
ggagtcttcgtcatcaggggagaaaatgttgttctcctcggagaaattgatgaagttaaa
gaagaaaacactcctctagaacaagttagtattgaagaaatccttgaggcacaacgcatt
gagcaagaacggcgacaggaacaagaacagctacgagcaagattcatgaaagagcgtgga
cttcagtatacggccgaaattggaccggatgacatgtattga
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integrated database retrieval system
